View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_high_66 (Length: 245)
Name: NF16702_high_66
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7171275 - 7171051
Alignment:
| Q |
1 |
ggaaacgagaacaatcttgaagctggtaataattgaattcatctttagcctattcatcttctgcaacatattatttgtctcgatcatagaggatataata |
100 |
Q |
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| T |
7171275 |
ggaaacgagaacaatcttgaagctggtaataattgaattcatttttagcctattcatcttctgcaacatattatttgtctcgatcatagtggatataaca |
7171176 |
T |
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| Q |
101 |
atgattcgatatcaaccaatgacnnnnnnngaacgaagatttgcttgcgatttggagacttcgatagcgaaatctaatacaaaactattttgtgtatacc |
200 |
Q |
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| T |
7171175 |
atgattcgatataaaccaatgacaaaaaaagaacgaagatttgcttgcgatttggagacttcgatagcgaaatctaatagaaaactattttgtgtacacc |
7171076 |
T |
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| Q |
201 |
caattggagaaaaagatagagatat |
225 |
Q |
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| T |
7171075 |
caattggagaaaaagatagagatat |
7171051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 7174430 - 7174361
Alignment:
| Q |
152 |
ttggagacttcgatagcgaaatctaatacaaaactattttgtgtatacccaattggagaaaaagatagag |
221 |
Q |
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|||||||| ||||||| ||||||| ||| |||||||||| ||||| | ||||||| ||||||||||||| |
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| T |
7174430 |
ttggagacgtcgatagggaaatcttatagaaaactatttcgtgtacatccaattgaggaaaaagatagag |
7174361 |
T |
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