View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_high_74 (Length: 227)

Name: NF16702_high_74
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_high_74
NF16702_high_74
[»] chr1 (5 HSPs)
chr1 (17-225)||(45806838-45807046)
chr1 (60-115)||(39742566-39742621)
chr1 (58-111)||(25954082-25954135)
chr1 (61-105)||(6092619-6092663)
chr1 (60-116)||(41625527-41625583)
[»] chr2 (2 HSPs)
chr2 (64-115)||(19513993-19514044)
chr2 (72-104)||(32987724-32987756)
[»] chr8 (3 HSPs)
chr8 (60-125)||(37439752-37439817)
chr8 (61-124)||(7664002-7664065)
chr8 (60-125)||(37439619-37439684)
[»] chr6 (2 HSPs)
chr6 (69-110)||(34382901-34382942)
chr6 (61-101)||(23776740-23776780)
[»] chr5 (2 HSPs)
chr5 (80-116)||(8223112-8223148)
chr5 (60-108)||(8624797-8624845)
[»] chr3 (3 HSPs)
chr3 (85-119)||(4224858-4224892)
chr3 (63-116)||(42984315-42984368)
chr3 (80-128)||(3613928-3613976)
[»] scaffold0533 (1 HSPs)
scaffold0533 (63-108)||(10578-10623)
[»] chr4 (1 HSPs)
chr4 (60-116)||(36291813-36291867)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 45806838 - 45807046
Alignment:
Q  17 gttatgtaactcggttcaaaatacactattagaagagattattgatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaat 116  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45806838 gttatgtaactcggttcaaaatacactattagaagagatcattgatcaataaatcacatcatgttttatttaatttaatgatgagatttattgatctaat 45806937  T
Q  117 agttgaaacaattttatacataacgtaacacttatcttatttgtgtaccataaatttggcttcaactcaaagttatacttggttgcttcatatatctctc 216  Q
    |||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||| |||||||||||||| |||| ||||| |||||||||||||| |    
T  45806938 agttgaaacaatcttatacataacgtaagacttatcttatttgcttaccataaatttagcttcaactcaaagctatatttggtagcttcatatatctcac 45807037  T
Q  217 actagtggc 225  Q
    || ||||||    
T  45807038 acgagtggc 45807046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 39742621 - 39742566
Alignment:
Q  60 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaa 115  Q
    ||||||||| |||| |||| ||| ||||||||||||| || |||||||||||||||    
T  39742621 gatcaataagtcatgtcatatttcatttaatttaatggtgggatttattgatctaa 39742566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 25954135 - 25954082
Alignment:
Q  58 ttgatcaataaatcatatcatgttttatttaatttaatgatgagatttattgat 111  Q
    |||||||| |||| ||||||| |||  ||||||||| |||||||||||||||||    
T  25954135 ttgatcaaaaaattatatcatatttcttttaatttattgatgagatttattgat 25954082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 6092619 - 6092663
Alignment:
Q  61 atcaataaatcatatcatgttttatttaatttaatgatgagattt 105  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||    
T  6092619 atcaatagatcatatcatttcctatttaatttaatgatgagattt 6092663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 41625583 - 41625527
Alignment:
Q  60 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaat 116  Q
    ||||||| ||||  ||||| ||||||||||||||||  ||| |||||||||||||||    
T  41625583 gatcaatgaatctcatcatattttatttaatttaatagtgaaatttattgatctaat 41625527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 19514044 - 19513993
Alignment:
Q  64 aataaatcatatcatgttttatttaatttaatgatgagatttattgatctaa 115  Q
    ||||| |||||| || ||| ||||||||||||||||||||||||||||||||    
T  19514044 aataagtcatattatatttcatttaatttaatgatgagatttattgatctaa 19513993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 32987756 - 32987724
Alignment:
Q  72 atatcatgttttatttaatttaatgatgagatt 104  Q
    ||||||| |||||||||||||||||||||||||    
T  32987756 atatcatattttatttaatttaatgatgagatt 32987724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 37439752 - 37439817
Alignment:
Q  60 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaatagttgaaac 125  Q
    ||||||||||||||||||| |||| || |||||||| || | |||||||||| ||||||| |||||    
T  37439752 gatcaataaatcatatcatattttgttcaatttaattataaaatttattgatttaatagtagaaac 37439817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 7664002 - 7664065
Alignment:
Q  61 atcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaatagttgaaa 124  Q
    |||||||||| | ||||| ||| |||||||||||||  ||||||| |||||||||| |||||||    
T  7664002 atcaataaattacatcatatttcatttaatttaatggggagattttttgatctaatggttgaaa 7664065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 37439619 - 37439684
Alignment:
Q  60 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaatagttgaaac 125  Q
    |||||||||||||||| || |||| || |||||||| || | |||||||||| ||||||| |||||    
T  37439619 gatcaataaatcatattatattttgttcaatttaattataaaatttattgatttaatagtagaaac 37439684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 34382942 - 34382901
Alignment:
Q  69 atcatatcatgttttatttaatttaatgatgagatttattga 110  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  34382942 atcaaatcatgtttcatttaatttaatgatgagatttattga 34382901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 23776780 - 23776740
Alignment:
Q  61 atcaataaatcatatcatgttttatttaatttaatgatgag 101  Q
    |||||||||||||||||| ||| |||||||||| |||||||    
T  23776780 atcaataaatcatatcatatttaatttaatttattgatgag 23776740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 8223148 - 8223112
Alignment:
Q  80 ttttatttaatttaatgatgagatttattgatctaat 116  Q
    ||||||||||||||||||| |||||||||||||||||    
T  8223148 ttttatttaatttaatgataagatttattgatctaat 8223112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 8624797 - 8624845
Alignment:
Q  60 gatcaataaatcatatcatgttttatttaatttaatgatgagatttatt 108  Q
    ||||| ||||||||||||| |||| |||||||||||| |||||||||||    
T  8624797 gatcagtaaatcatatcatattttctttaatttaatggtgagatttatt 8624845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 4224892 - 4224858
Alignment:
Q  85 tttaatttaatgatgagatttattgatctaatagt 119  Q
    |||||||||||||||||||||||||||| ||||||    
T  4224892 tttaatttaatgatgagatttattgatccaatagt 4224858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 42984315 - 42984368
Alignment:
Q  63 caataaatcatatcatgttttatttaatttaatgatgagatttattgatctaat 116  Q
    |||| ||||| ||||| | ||||||||||||||||| | |||||||||||||||    
T  42984315 caatgaatcacatcatatattatttaatttaatgataaaatttattgatctaat 42984368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 3613928 - 3613976
Alignment:
Q  80 ttttatttaatttaatgatgagatttattgatctaatagttgaaacaat 128  Q
    ||||||||||||||| | ||||||||||||||| ||||||  |||||||    
T  3613928 ttttatttaatttaacggtgagatttattgatccaatagtataaacaat 3613976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 10623 - 10578
Alignment:
Q  63 caataaatcatatcatgttttatttaatttaatgatgagatttatt 108  Q
    |||||||| | ||||||||||||||||||||||| ||| |||||||    
T  10623 caataaattacatcatgttttatttaatttaatggtgaaatttatt 10578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 36291867 - 36291813
Alignment:
Q  60 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaat 116  Q
    ||||||||||||| ||||| | | |||||||||||||||||||  ||||||||||||    
T  36291867 gatcaataaatcacatcatatatcatttaatttaatgatgaga--tattgatctaat 36291813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University