View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_high_76 (Length: 224)

Name: NF16702_high_76
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_high_76
NF16702_high_76
[»] chr3 (18 HSPs)
chr3 (9-169)||(37742738-37742898)
chr3 (1-169)||(44380259-44380427)
chr3 (1-167)||(33509685-33509851)
chr3 (1-142)||(47426355-47426496)
chr3 (1-92)||(50934505-50934596)
chr3 (1-70)||(32319462-32319531)
chr3 (1-169)||(47186180-47186349)
chr3 (1-62)||(10179868-10179929)
chr3 (4-165)||(35094554-35094717)
chr3 (1-92)||(42664678-42664769)
chr3 (3-92)||(31187145-31187234)
chr3 (19-169)||(17466296-17466446)
chr3 (1-62)||(10018671-10018732)
chr3 (1-148)||(39498689-39498835)
chr3 (5-92)||(34029366-34029453)
chr3 (118-169)||(19619220-19619271)
chr3 (1-62)||(10123211-10123272)
chr3 (11-51)||(25859037-25859077)
[»] chr2 (11 HSPs)
chr2 (1-168)||(34392080-34392247)
chr2 (10-169)||(23863801-23863958)
chr2 (1-169)||(7381697-7381864)
chr2 (1-92)||(21603964-21604055)
chr2 (1-169)||(37357915-37358087)
chr2 (19-169)||(4779608-4779758)
chr2 (3-169)||(4775641-4775808)
chr2 (106-169)||(21606149-21606212)
chr2 (17-169)||(25275620-25275771)
chr2 (27-169)||(41095784-41095926)
chr2 (1-150)||(14565870-14566019)
[»] chr1 (13 HSPs)
chr1 (1-169)||(2569042-2569209)
chr1 (1-167)||(29119324-29119490)
chr1 (1-165)||(32676141-32676305)
chr1 (9-145)||(8462141-8462277)
chr1 (1-169)||(46435463-46435619)
chr1 (1-92)||(8809715-8809806)
chr1 (1-89)||(25161314-25161402)
chr1 (170-224)||(1606586-1606640)
chr1 (1-58)||(7214520-7214577)
chr1 (110-170)||(15387155-15387215)
chr1 (5-169)||(35998261-35998426)
chr1 (133-168)||(36771533-36771568)
chr1 (1-45)||(16679821-16679864)
[»] chr4 (18 HSPs)
chr4 (5-169)||(12473713-12473877)
chr4 (5-169)||(12528122-12528286)
chr4 (1-163)||(35869575-35869737)
chr4 (1-169)||(22343342-22343510)
chr4 (1-144)||(33249397-33249540)
chr4 (5-152)||(21260803-21260950)
chr4 (1-167)||(52910050-52910215)
chr4 (2-169)||(51811920-51812087)
chr4 (1-170)||(55590487-55590645)
chr4 (1-92)||(52012783-52012874)
chr4 (100-169)||(1796654-1796723)
chr4 (172-224)||(5657377-5657429)
chr4 (3-67)||(34829183-34829247)
chr4 (1-92)||(49999663-49999754)
chr4 (1-55)||(49998487-49998541)
chr4 (108-169)||(35781021-35781082)
chr4 (5-92)||(9799438-9799525)
chr4 (27-67)||(1796163-1796203)
[»] chr6 (8 HSPs)
chr6 (1-169)||(1211842-1212010)
chr6 (1-169)||(5403874-5404042)
chr6 (1-170)||(32644835-32645002)
chr6 (1-61)||(11753172-11753232)
chr6 (1-92)||(34245572-34245663)
chr6 (125-169)||(10503257-10503301)
chr6 (1-67)||(11113561-11113627)
chr6 (100-151)||(26526385-26526436)
[»] chr5 (15 HSPs)
chr5 (1-169)||(33858536-33858704)
chr5 (1-168)||(19357261-19357427)
chr5 (5-170)||(11607531-11607696)
chr5 (1-169)||(1826264-1826432)
chr5 (12-170)||(33271630-33271788)
chr5 (1-169)||(38010611-38010780)
chr5 (1-130)||(39570080-39570209)
chr5 (1-91)||(13086758-13086848)
chr5 (1-92)||(9827793-9827884)
chr5 (1-92)||(13015386-13015477)
chr5 (1-92)||(29989967-29990058)
chr5 (51-145)||(42148201-42148295)
chr5 (1-92)||(13478120-13478211)
chr5 (16-163)||(10292893-10293039)
chr5 (133-169)||(9827903-9827939)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-169)||(13003-13172)
[»] chr8 (8 HSPs)
chr8 (1-169)||(24337828-24337996)
chr8 (1-163)||(41179567-41179729)
chr8 (1-169)||(11254026-11254193)
chr8 (4-146)||(4708328-4708470)
chr8 (3-92)||(18168392-18168481)
chr8 (3-92)||(18631949-18632038)
chr8 (1-92)||(1514808-1514899)
chr8 (1-68)||(32825934-32826001)
[»] chr7 (6 HSPs)
chr7 (1-169)||(35341541-35341709)
chr7 (1-169)||(48250159-48250329)
chr7 (1-170)||(48072394-48072561)
chr7 (20-169)||(32694568-32694717)
chr7 (1-89)||(31306951-31307040)
chr7 (100-151)||(40856949-40857000)
[»] scaffold0519 (1 HSPs)
scaffold0519 (1-169)||(11200-11367)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-170)||(34199-34366)
[»] scaffold0263 (2 HSPs)
scaffold0263 (1-45)||(23098-23142)
scaffold0263 (26-92)||(23174-23240)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 37742738 - 37742898
Alignment:
Q  9 attaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgt 108  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||       |||| ||||    
T  37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatatttttttaaagagtgt 37742837  T
Q  109 gccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  37742838 gccacgtggcacattataattgggcaatggtatataccattatgttacacaagtgctatcc 37742898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 44380259 - 44380427
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||||| |||| |||  |||  ||||||||||||||||||       |    
T  44380259 tgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgatatactttttta 44380358  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||| |||||    
T  44380359 aagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgttatcc 44380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 33509685 - 33509851
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| |||  |||   |||||||||||||| ||       |    
T  33509685 tgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtattttttta 33509784  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 167  Q
    |||| |||||||| ||||||||| |||||  |||||| |||||||||||||  ||||||||||||||    
T  33509785 aaggatgtgccacatggcacattctaattagacaatgatatataccattattgtacacaagtgctat 33509851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 47426355 - 47426496
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||  |||   |||||||||||||||||       |    
T  47426355 tgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatatattttttta 47426454  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtata 142  Q
    ||||||||||||| ||| ||||| ||||||  ||||||||||    
T  47426455 aagggtgtgccacatggtacattctaattgggcaatggtata 47426496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 50934505 - 50934596
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||  ||||| ||||||||||||    
T  50934505 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32319531 - 32319462
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatat 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  32319531 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatggtatat 32319462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 47186180 - 47186349
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata-nnnnnnn 99  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||  |||  ||| ||||||||||||||            
T  47186180 tgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 47186279  T
Q  100 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| ||||||||| |||||||   ||||||   |||| |||||| ||| ||| ||||||||||||||||    
T  47186280 aaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 47186349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10179929 - 10179868
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaa 62  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10179929 tgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 35094554 - 35094717
Alignment:
Q  4 gtaccattaaggtaccaatggtatataccattggccaatta--gagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaa 101  Q
    |||||||||| |||||| ||||||||||||||| | |||||  |||| ||||||||||||||||||  |||  |||  |||||||||||||       ||    
T  35094554 gtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttgatatatttttttaa 35094653  T
Q  102 agggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgct 165  Q
    ||| |||| |||||| |||||| |||||| |||||| || ||||||||||| ||||||| ||||    
T  35094654 aggatgtgtcacgtgacacattctaattggacaatgatacataccattatggtacacaaatgct 35094717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 42664678 - 42664769
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||| | |||||| ||||| ||||| |||||||||||| |||||||||||| |||  |||| |||||||||||||    
T  42664678 tgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 31187234 - 31187145
Alignment:
Q  3 tgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |||||||||||  |||  |||| |||||||||||||    
T  31187234 tgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 17466296 - 17466446
Alignment:
Q  19 caatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggc 118  Q
    |||||||||||| |||||| ||||||||||||| |||||| ||||||||  |||  |||| |||| ||||||||       ||||||| ||||||||  |    
T  17466296 caatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgatatatttttttaaagggtatgccacgtacc 17466395  T
Q  119 acattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||| | ||| ||| |||||||||||||||||| | ||||||| || |||||    
T  17466396 acaatctaactgagcaatggtatataccattacggtacacaaatgttatcc 17466446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10018732 - 10018671
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaa 62  Q
    ||||||||||||| ||||||||| ||||||||||||| |||| | |||||||||||||||||    
T  10018732 tgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 39498835 - 39498689
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||| ||||||||| ||||||  ||||| |||||| |||||| |||||| | ||||||| |||  |||  ||||||| |||||       |    
T  39498835 tgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata-attttta 39498737  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccat 148  Q
    |||| ||||||||||| |||||| ||||||| |||| |||||||||||    
T  39498736 aaggatgtgccacgtgacacattctaattgagcaatagtatataccat 39498689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 34029453 - 34029366
Alignment:
Q  5 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||| |||||| |||||  |||| |||||||||||| ||| |||||||  |||  |||| |||||||||||||    
T  34029453 taccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 19619220 - 19619271
Alignment:
Q  118 cacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||| ||||||  |||||||||||||||||||| |||||| |||||||||    
T  19619220 cacattttaattgggcaatggtatataccattatggtacacatgtgctatcc 19619271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10123272 - 10123211
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaa 62  Q
    ||||||||||||| ||| ||||| |||||| || ||| |||| | |||||||||||||||||    
T  10123272 tgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 25859077 - 25859037
Alignment:
Q  11 taaggtaccaatggtatataccattggccaattagagtgtg 51  Q
    |||| |||||||| |||||| ||||||||||||||||||||    
T  25859077 taagctaccaatgttatataacattggccaattagagtgtg 25859037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 34392247 - 34392080
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||||||||||||       |    
T  34392247 tgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatattttttta 34392148  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatc 168  Q
    ||||||||||||| ||||||| | |||||| ||||||||||||||||||||| |||||||||||||||    
T  34392147 aagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 23863958 - 23863801
Alignment:
Q  10 ttaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtg 109  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||  |||  ||||||||||||||||||       ||||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtg 23863861  T
Q  110 ccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| ||||||||| |||||| |||||| |||||| ||||||| ||||| ||||||||||    
T  23863860 ccacatggcacattctaattggacaatgatatatatcattatggtacactagtgctatcc 23863801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 7381697 - 7381864
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||  |||  ||| ||||||||||||||       |    
T  7381697 tgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgatata-tttttta 7381795  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| |||| || ||| |||||| ||||||  |||| ||||||||||||||  ||| ||||| ||||||    
T  7381796 aaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagtacgcaagttctatcc 7381864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 21603964 - 21604055
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||  |||||||||||||||  |||  |||| |||||||||||||    
T  21603964 tgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 37358087 - 37357915
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgata----tannnn 96  Q
    |||||| |||||||||||||||| |||||||||||| | |||||||||||| |||||| ||||||||  |||  |||||||||||| |||    |         
T  37358087 tgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaatatttttttttt 37357988  T
Q  97 nnnaaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
       |||   ||||||||||| |||||| |||||| |||||||||||||| |||||| ||||||||||||||||    
T  37357987 tttaaactatgtgccacgtgacacattctaattggacaatggtatatactattatgatacacaagtgctatcc 37357915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 4779608 - 4779758
Alignment:
Q  19 caatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggc 118  Q
    |||| |||||||||||||  || ||| |||||||| |||| ||||||||  |||  ||| ||||||||||||||       ||||| |||| |||||| |    
T  4779608 caatagtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgac 4779707  T
Q  119 acattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| |||||    
T  4779708 acattctaattggacaatggtatataccattatgatacacaagtgttatcc 4779758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 4775641 - 4775808
Alignment:
Q  3 tgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaat-gctttatttgatatannnnnnnaa 101  Q
    |||||||||||| |||||||| ||||||  |||||||||||||| |||  || |||||||| |||  |||  ||| | ||||||| |||||       ||    
T  4775641 tgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatttttttaa 4775740  T
Q  102 agggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||| |||||||| ||||||| | |||||| ||||||||||||||||||||| ||||||| || |||||    
T  4775741 aggatgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaaatgttatcc 4775808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 21606149 - 21606212
Alignment:
Q  106 tgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||| |||| |||||||||||    
T  21606149 tgtgccacgtgacacattctaattggacaatggtatataccattatgatacagaagtgctatcc 21606212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 25275771 - 25275620
Alignment:
Q  17 accaatggtatataccattggccaattagagtgtgccacctaccaatgtta-tattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgt 115  Q
    |||||| || ||||| ||||  ||||||  |||||||||||| |||||||| | |||  ||| ||||||||||||||       ||||| ||||||||||    
T  25275771 accaatagtttatacgattgatcaattattgtgtgccacctatcaatgttactttta--aatactttatttgatatacttttttaaaggatgtgccacgt 25275674  T
Q  116 ggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |  ||||| |||||| |||||| |||||||||||||| |||| |||||||||||    
T  25275673 gatacattctaattggacaatgatatataccattatgatacagaagtgctatcc 25275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 41095926 - 41095784
Alignment:
Q  27 tataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggcacattata 126  Q
    ||||| ||||| |||||||||||  ||||||||||||||||  |||  |||||||||||||||| |       ||| ||| |||||| |||||||   ||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacacccta 41095827  T
Q  127 attgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    | ||  |||||||||||||||||||| |||  |||||||||||    
T  41095826 aatggccaatggtatataccattatggtacctaagtgctatcc 41095784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 14566019 - 14565870
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||| ||||||||||||| |||||| |||||  ||| |||||||||| || ||||||| |||| |||  | | ||| ||||||||||       |    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatatagtttttta 14565920  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccatta 150  Q
    |||| ||||||| ||  |||||| ||| ||| |||| ||||||| |||||    
T  14565919 aaggatgtgccatgtaacacattttaactgaccaattgtatataacatta 14565870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 2569042 - 2569209
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |    
T  2569042 tgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata-tttttta 2569140  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||| |||||||||| |||||   |||| ||||||| ||||||||||||||||||||||||    
T  2569141 aagggtgtgccatgtggcacattctaattaggcaatagtatatatcattatgttacacaagtgctatcc 2569209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 29119490 - 29119324
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||  |||   |||||||||||||||||       |    
T  29119490 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatatattttttta 29119391  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 167  Q
    ||||||||||||| ||||||||| ||||||  |||| ||||||||| ||||| ||||||| ||||||    
T  29119390 aagggtgtgccacatggcacattctaattgggcaattgtatatacccttatggtacacaaatgctat 29119324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 32676141 - 32676305
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||  |||  ||||||||||||||||||       |    
T  32676141 tgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgatatattttttta 32676240  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgct 165  Q
    |||  |||||||| ||||||| | |||||| ||||||||||||||||||||  ||||||| ||||    
T  32676241 aagcatgtgccacatggcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 8462141 - 8462277
Alignment:
Q  9 attaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgt 108  Q
    ||||| |||||||||||||||| |||||  |||||| ||||||||||||||||||||||| |||  |||| ||||||| |||||       |||||| ||    
T  8462141 attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaatatacttttttaaagggcgt 8462240  T
Q  109 gccacgtggcacattataattgaacaatggtatatac 145  Q
    |||||||| |||||| |||||| ||||||||||||||    
T  8462241 gccacgtgacacattttaattggacaatggtatatac 8462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 46435619 - 46435463
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||       |||||      |||||||||||||||||       |    
T  46435619 tgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcacct-------ttata-----gatgctttatttgatatatattttta 46435532  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||| ||| || |||||| ||||||  |||||||||||||||||||| ||||||||| ||||||    
T  46435531 aagggtgtgtcacatgacacattctaattgggcaatggtatataccattatggtacacaagtcctatcc 46435463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 8809806 - 8809715
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |||||||||||  |||  |||| |||||||||||||    
T  8809806 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 25161314 - 25161402
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgat 89  Q
    ||||||||||||| ||  |||||||||||||||||| ||||||| ||||||||||||| ||||||||  |||  |||| ||||||||||    
T  25161314 tgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 1606640 - 1606586
Alignment:
Q  170 agaggatgttgtgttttgataaaattggccttattttatcgttgaaatgtcgaaa 224  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1606640 agaggaggttgtgttttgacaaaattagccttattttatcgttgaaatgtcgaaa 1606586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7214577 - 7214520
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 58  Q
    |||||||||||||||||| ||| |||||||  ||||| ||||||||||||| ||||||    
T  7214577 tgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcaccta 7214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 15387215 - 15387155
Alignment:
Q  110 ccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 170  Q
    ||||||| |||||| ||||||||||||  |||||||||||||| |||| ||||| ||||||    
T  15387215 ccacgtgacacattttaattgaacaatattatataccattatggtacataagtgttatcca 15387155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 35998261 - 35998426
Alignment:
Q  5 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata-nnnnnnnaaag 103  Q
    ||||||||||||||||||| |||||| |||||   ||| |||||||||||| || ||||||||| |||  | || ||||||| |||||        ||||    
T  35998261 taccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgttttttaaag 35998360  T
Q  104 ggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
     ||||||||| ||||||||  ||||||   |||| |||||| ||| ||| |||||| |||||||||    
T  35998361 tgtgtgccacatggcacatcttaattggctaatgttatataacataatggtacacaggtgctatcc 35998426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 36771533 - 36771568
Alignment:
Q  133 caatggtatataccattatgttacacaagtgctatc 168  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36771533 caatggtatataccattatattacacaagtgctatc 36771568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16679864 - 16679821
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattag 45  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||    
T  16679864 tgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 12473713 - 12473877
Alignment:
Q  5 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||||||       |||||    
T  12473713 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagg 12473812  T
Q  105 gtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| ||| || |||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  12473813 gtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 12528122 - 12528286
Alignment:
Q  5 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||||||       |||||    
T  12528122 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatatatttttttaaagg 12528221  T
Q  105 gtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| ||| || |||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  12528222 gtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtgctatcc 12528286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 35869737 - 35869575
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||   ||  |||| |||||||||||||       |    
T  35869737 tgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatatactttttta 35869638  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtg 163  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||    
T  35869637 aagggtgtgccacgtgacacattctaattgaacaatggtatataccattatggtagacaagtg 35869575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 22343342 - 22343510
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||| ||||||||  |||  ||||||||||||||||||       |    
T  22343342 tgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatatattatttta 22343441  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| |||||||| || |||||| ||||||||||||| |||||||||||||| |||||| ||| |||||    
T  22343442 aaggatgtgccacatgacacattctaattgaacaatgatatataccattatggtacacaggtgatatcc 22343510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 33249540 - 33249397
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||  |||  ||||||||||||||||||       |    
T  33249540 tgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatatatattttta 33249441  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatata 144  Q
    ||||||||||||| ||||||| | ||||||| ||||| ||||||    
T  33249440 aagggtgtgccacatggcacaatctaattgagcaatgatatata 33249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 21260803 - 21260950
Alignment:
Q  5 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagg 104  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||  |||  |||| |||||||||||||       |||||    
T  21260803 taccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatatttttttaaagg 21260902  T
Q  105 gtgtgccacgtggcacattataattgaacaatggtatataccattatg 152  Q
    ||||||||| ||||||||| ||||||   |||| ||||||||||||||    
T  21260903 gtgtgccacatggcacattctaattgggtaatgttatataccattatg 21260950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 52910215 - 52910050
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||| | |||||||||| |||||||||||||||||||| |||||||||||||||||| |||  |||  |||||||||||||||| |       |    
T  52910215 tgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata-aaaaaatta 52910117  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctat 167  Q
    || ||| ||||||||||||||   ||||||| |||||||||||||||| ||| |||| |||||||||    
T  52910116 aaaggtatgccacgtggcacaccctaattgatcaatggtatataccataatggtacataagtgctat 52910050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 51811920 - 51812087
Alignment:
Q  2 gtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaa 101  Q
    |||||||||||||||| ||| | ||||||  |||||||||||||||| ||||||||||||||||||  |||  |||  ||| |||||||||       ||    
T  51811920 gtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgatatatttttttaa 51812019  T
Q  102 agggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||| ||| |||||| |||||| | ||||||||||||||||||| || ||||||| |||||    
T  51812020 agggtgtgccatgtgacacattctaattggataatggtatataccattatgatatacaagtgttatcc 51812087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 55590487 - 55590645
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||| |||||  |||||| |||||| |||||||||||||||           ||||||||||||||       |    
T  55590487 tgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta-----------ctttatttgatatactttttta 55590575  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 170  Q
    |||| ||||||||||| |||||| ||||||  |||||| ||||||||||||| ||| |||||||||||||    
T  55590576 aaggatgtgccacgtgacacattctaattgggcaatggaatataccattatggtacgcaagtgctatcca 55590645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 52012783 - 52012874
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| | |||||||||| |||||||||||  |||  |||| |||||||||||||    
T  52012783 tgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatata 52012874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 1796654 - 1796723
Alignment:
Q  100 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| |||| ||||||||||| | |||||| ||||||||||||||||||||| |||||||||| |||||    
T  1796654 aaaggatgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatcc 1796723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 5657429 - 5657377
Alignment:
Q  172 aggatgttgtgttttgataaaattggccttattttatcgttgaaatgtcgaaa 224  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  5657429 aggaggttgtgttttgacaaaattggccttattttattgttgaaatgtcgaaa 5657377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 34829247 - 34829183
Alignment:
Q  3 tgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgtta 67  Q
    ||||| ||||||||||||||| |||||| || |||||||||| |||||| |||||||||||||||    
T  34829247 tgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgtta 34829183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 49999754 - 49999663
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    |||||||||| ||| ||| |||| ||| |  |||||| ||||||||||||| ||| |||||||||||| |||  ||||||||||||||||||    
T  49999754 tgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatata 49999663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49998487 - 49998541
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccac 55  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| |||||||||    
T  49998487 tgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 35781021 - 35781082
Alignment:
Q  108 tgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||||||| ||||||  |||||||||||||||||||| ||| |||||| |||||    
T  35781021 tgccacgtggcacattctaattgggcaatggtatataccattatggtacgcaagtgatatcc 35781082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 9799525 - 9799438
Alignment:
Q  5 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||| |||||| ||||| ||||  ||| |||||||| |||||||||||  |||  |||| ||||||| |||||    
T  9799525 taccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 1796163 - 1796203
Alignment:
Q  27 tataccattggccaattagagtgtgccacctaccaatgtta 67  Q
    |||||||||||||||||| | ||||||||||| ||||||||    
T  1796163 tataccattggccaattatattgtgccacctatcaatgtta 1796203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 1212010 - 1211842
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||  ||| | |||||||||||||||||       |    
T  1212010 tgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatattttttta 1211911  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||||||||||||| |||| |  |||||||||||||||||||| |||||||||| |||||    
T  1211910 aagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgatatcc 1211842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 5404042 - 5403874
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||| |||||||||||  ||||| || ||||||| ||||||||||||||||||  |||   ||| |||||||||||||       |    
T  5404042 tgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatatattttttta 5403943  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| ||  ||| || |||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  5403942 aagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtgctatcc 5403874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 32645002 - 32644835
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||| || | || ||||||| |||||||||||||  ||||| ||||||| |||||||  |||  ||| ||||||||| ||||       |    
T  32645002 tgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttactttaa-aatactttatttgttatattttttta 32644904  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 170  Q
    ||||||||||||| ||  ||| | |||||||||||||||||||||||||||| |||||||||||||||||    
T  32644903 aagggtgtgccacatgatacaatctaattgaacaatggtatataccattatg-tacacaagtgctatcca 32644835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11753172 - 11753232
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacca 61  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  11753172 tgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 34245572 - 34245663
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    |||||||||||||||||  |||| |||||| ||||| ||||| | |||||||||| |||||||||||  |||  ||| ||||||||||||||    
T  34245572 tgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 10503301 - 10503257
Alignment:
Q  125 taattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  10503301 taattggacaatggtatataccattatggtacacaagtgctatcc 10503257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11113561 - 11113627
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgtta 67  Q
    ||||||||||||||||||||||| |||||| ||||| | ||| |||||||| ||| ||| |||||||    
T  11113561 tgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgtta 11113627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 26526436 - 26526385
Alignment:
Q  100 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattat 151  Q
    |||||||||| |||||| |||||| |||||||||||| ||| ||||||||||    
T  26526436 aaagggtgtgtcacgtgacacattctaattgaacaatagtagataccattat 26526385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 33858704 - 33858536
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||  |||  |||| |||||||||||||       |    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||||||| |||||| ||||||  |||||||||||||||||||| ||||||||||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtgctatcc 33858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 19357427 - 19357261
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||||||||||||       |    
T  19357427 tgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata-tttttta 19357329  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatc 168  Q
    |||| ||| ||||||| |||||| |||||| |||||| |||||||||||||| |||||||||||||||    
T  19357328 aaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 11607696 - 11607531
Alignment:
Q  5 taccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagg 104  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||  |||  |||| |||||||||||||       |||||    
T  11607696 taccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgatatacttttttaaagg 11607597  T
Q  105 gtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 170  Q
    |||||||||| | |||||| |||||| ||||||||||||| ||||||| |||||||||||||||||    
T  11607596 gtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtgctatcca 11607531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 1826264 - 1826432
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |||  ||    |||||||||||||||||       |    
T  1826264 tgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatatattttttta 1826363  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||  |||||||| ||||||||| ||||||||||||| |||||| ||||||| |||||||||| |||||    
T  1826364 aagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtgatatcc 1826432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 33271630 - 33271788
Alignment:
Q  12 aaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgcc 111  Q
    |||||||||||| |||||| |||||||||||||||||||| || ||| ||||||||  | |  ||||||||||||||||||       ||||| || |||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgcc 33271729  T
Q  112 acgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 170  Q
    |||||||||||| ||||||  |||| ||||||||||||||| |||| ||||||||||||    
T  33271730 acgtggcacattctaattgggcaatagtatataccattatggtacataagtgctatcca 33271788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 38010780 - 38010611
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata-nnnnnnn 99  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||  |||  ||| ||||||||||||||            
T  38010780 tgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgtttttt 38010681  T
Q  100 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| ||||||||| |||||||   ||||||   |||| |||||| ||| ||| ||||||||||||||||    
T  38010680 aaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtgctatcc 38010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 39570209 - 39570080
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||| |||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||  |||  |||| |||||||||||||       |    
T  39570209 tgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgatatactttttta 39570110  T
Q  101 aagggtgtgccacgtggcacattataattg 130  Q
    ||||||||||||| || || ||| ||||||    
T  39570109 aagggtgtgccacctgacatattctaattg 39570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 13086758 - 13086848
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatat 91  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |||||||||||| |||  |||  ||||||||||||    
T  13086758 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatat 13086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9827793 - 9827884
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||| |||||||||||| |||  |||  |||  |||||||||||||    
T  9827793 tgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgatata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13015386 - 13015477
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |||||||||||  |||  |||  |||||||||||||    
T  13015386 tgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatata 13015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 29989967 - 29990058
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||| ||||| |||||| ||||| ||||| |||||||||||| |||||||||||  |||  |||| |||||||||||||    
T  29989967 tgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 29990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 42148201 - 42148295
Alignment:
Q  51 gccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggcacattataattgaacaatggtatatac 145  Q
    |||||||||||||||||  |||  |||| |||||||||||||       ||||||||| |||||| ||||||| |||||||||||||||||||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatatttttttaaagggtgtaccacgttgcacattctaattgaacaatggtatatac 42148295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13478211 - 13478120
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||| ||||||| |||||| ||||| ||||| |||||||||||| ||||| |||||  |||  |||  |||||||||||||    
T  13478211 tgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 10292893 - 10293039
Alignment:
Q  16 taccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgt 115  Q
    |||||||| |||||| ||||||||||| ||| |||||||| ||| |||||||| ||   | || ||||||||||||        ||||||||||||||||    
T  10292893 taccaatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatat-tttttttaaagggtgtgccacgt 10292991  T
Q  116 ggcacattataattgaacaatggtatataccattatgttacacaagtg 163  Q
    ||||||   ||||||  ||||| |||||| ||||||| ||||||||||    
T  10292992 ggcacaccttaattggccaatgttatataacattatggtacacaagtg 10293039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 9827903 - 9827939
Alignment:
Q  133 caatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||||||||||| |||||||||| |||||    
T  9827903 caatggtatataccattatggtacacaagtgttatcc 9827939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13172 - 13003
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||  ||| | |||||||||||||||||       |    
T  13172 tgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatatattttttta 13073  T
Q  101 aaggg-tgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||| |||||||||||||||||| |||| |  |||||||||||||||||||| ||||||||||||||||    
T  13072 aagggttgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgctatcc 13003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 24337996 - 24337828
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||| ||||||||| |||||||||||||||| || |||||||||||||||| ||||||||||||  |||   |||||||||||||||||       |    
T  24337996 tgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatattttta 24337897  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    ||||||||||||| | ||||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  24337896 aagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 24337828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 41179729 - 41179567
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||||| |||||||| ||||||  |||  |||| ||||||| |||||       |    
T  41179729 tgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaatatattttttta 41179630  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtg 163  Q
    | || |||||||| ||||||||| ||||||  |||||||||||||||||||| ||||||||||    
T  41179629 atggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 11254193 - 11254026
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||  |||||||| |||||| ||||| ||| ||| ||| | ||||||||||||||||  |||  |||| |||||||||||||       |    
T  11254193 tgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatacattttta 11254095  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||||||| |||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  11254094 aagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11254026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 4708470 - 4708328
Alignment:
Q  4 gtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaag 103  Q
    |||||| |||||||||||||| ||||| |||  |||||||| |||||| |||||||||||||||  |||  |||| |||||||||||||       ||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaag 4708371  T
Q  104 ggtgtgccacgtggcacattataattgaacaatggtatatacc 146  Q
    |||||||||||||||||||| |||||   ||||||||| ||||    
T  4708370 ggtgtgccacgtggcacattctaattaggcaatggtatttacc 4708328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
Q  3 tgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||| |||  |||  ||| ||||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
Q  3 tgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||| |||  |||  ||| ||||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1514808 - 1514899
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||||||||||||||||||||| |||||| |||||  |||| ||||||| |||| |||||||||||  |||  |||| |||||||||||||    
T  1514808 tgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32826001 - 32825934
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttat 68  Q
    ||||||||||||| ||| ||||| | |||||||||||||||||||||| || ||| || |||||||||    
T  32826001 tgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttat 32825934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 35341541 - 35341709
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||  |||  |||| |||||||||||||       |    
T  35341541 tgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 35341640  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||||||| |||||| |||||| |||||| |||||| ||||||| || | ||||| |||||    
T  35341641 aagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggtagataagtgttatcc 35341709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 48250159 - 48250329
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||  |||   ||||||||||||||||        |    
T  48250159 tgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatattttttttta 48250258  T
Q  101 aagggtgtgc--cacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||| |||  || ||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  48250259 aagggtatgctacatgtgtcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 48250329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 48072394 - 48072561
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||| |||||||||||||| |||||  ||||||  ||||||||||||||||| |  ||||||||| |||  |||  |||||||||| ||       |    
T  48072394 tgtgtactattaaggtaccaatagtata--ccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgtattttttta 48072491  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 170  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||||||||||    
T  48072492 aagggtgtgccacgtggcacattctaattgggcaatggtatataccattatggtacacaagtgctatcca 48072561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 32694717 - 32694568
Alignment:
Q  20 aatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnnaaagggtgtgccacgtggca 119  Q
    |||| |||||||||||||  ||||||||||| ||| ||| ||||||||  |||  ||| ||||||||||||||       ||||||||||||||||| ||    
T  32694717 aatgatatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgtgaca 32694618  T
Q  120 cattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||| |||||   |||||||||||||||||||  ||||||||||||||||    
T  32694617 cattctaattaggcaatggtatataccattatagtacacaagtgctatcc 32694568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31307040 - 31306951
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaatt-agagtgtgccacctaccaatgttatattaccaatgctttatttgat 89  Q
    ||||||||||||| ||| ||||| |||||| ||||| |||||| | ||||||| ||||||||||||||  |||  |||||||||||||||    
T  31307040 tgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 40856949 - 40857000
Alignment:
Q  100 aaagggtgtgccacgtggcacattataattgaacaatggtatataccattat 151  Q
    |||||||||||||| || |||||| |||||| |||||| |||||||||||||    
T  40856949 aaagggtgtgccacatgacacattctaattggacaatgatatataccattat 40857000  T

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Target: scaffold0519 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 11200 - 11367
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    |||||||||||||  |||||||| |||||| ||||| ||| ||| ||| | ||||||||||||||||  |||  |||| |||||||||||||       |    
T  11200 tgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatatacattttta 11298  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcc 169  Q
    |||||||||||||||| |||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  11299 aagggtgtgccacgtgacacattctaactgagcaatggtatataccattatggtacacaaatgctatcc 11367  T

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Target: scaffold0032 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 34199 - 34366
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatatannnnnnna 100  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| |||  |||  |||  |||||||||||||       |    
T  34199 tgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgatata-tttttta 34297  T
Q  101 aagggtgtgccacgtggcacattataattgaacaatggtatataccattatgttacacaagtgctatcca 170  Q
    ||||||||| |||||| |||||| |||||| | |||| |||||||| ||||| ||||||| |||||||||    
T  34298 aagggtgtgtcacgtgacacattctaattggataatgttatatacc-ttatggtacacaaatgctatcca 34366  T

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Target: scaffold0263 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23098 - 23142
Alignment:
Q  1 tgtgtaccattaaggtaccaatggtatataccattggccaattag 45  Q
    |||||| |||||||||||||||||||||||| |||||||||||||    
T  23098 tgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

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Target: scaffold0263; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 23240 - 23174
Alignment:
Q  26 atataccattggccaattagagtgtgccacctaccaatgttatattaccaatgctttatttgatata 92  Q
    ||||| |||||||||||||||||||||||||||||||| |||  |||  |||  |||||||||||||    
T  23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

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