View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_10 (Length: 529)
Name: NF16702_low_10
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 136 - 395
Target Start/End: Original strand, 42463120 - 42463379
Alignment:
| Q |
136 |
tggcttctatggctactacaggtgttatcaaagtaccacgctgttcttcttcatcatcaaatataagaaacaaagccattcaaagaagtctttcattctc |
235 |
Q |
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| T |
42463120 |
tggcttctatggctactacaggtgttatcaaagtaccacgttgttcttcttcatcatcaaatataagaaacaaagccattcaaagaagtctttcattctc |
42463219 |
T |
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| Q |
236 |
atcatcacaactctctggagacaagattgttacagtttctggtggtgcaggaagaggaaggtgcatccggaagcatgtgatcgttactcctaaggctgtt |
335 |
Q |
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| T |
42463220 |
atcatcacaactctctggagacaagattgttacagtttctggtggtgcaggaagaggaaggtgcatccggaagcatgtgatcgtcactcctaaggctgtt |
42463319 |
T |
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| Q |
336 |
tctgattcacagaattctcagacttgccttgatcctgacgctagcagagtgagtttatat |
395 |
Q |
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| T |
42463320 |
tctgattcacagaattctcagacttgccttgatcctgacgctagcagagtgagtttatat |
42463379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 428 - 511
Target Start/End: Original strand, 42463412 - 42463495
Alignment:
| Q |
428 |
agagctaagagctgaatgaaaagtagttaaaattgttaattttctatcacatatgagtgtatgtcaaatcatatgttagtgttc |
511 |
Q |
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| T |
42463412 |
agagctaagagctgaatgaaaagtagttaaaattgttaattttctatcacatatgagtgtatgtcaaatcatatgttagtgttc |
42463495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 42463003 - 42463049
Alignment:
| Q |
19 |
tatggtccataattacaagatcacaattcacacatactcttattctg |
65 |
Q |
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| T |
42463003 |
tatggtccataattacaagatcacaattcacatatactcttattctg |
42463049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 37076814 - 37076882
Alignment:
| Q |
322 |
ctcctaaggctgtttctgattcacagaattctcagacttgccttgatcctgacgctagcagagtgagtt |
390 |
Q |
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| T |
37076814 |
ctcctaaggctgtttctgattccaaaaactctcagacttgtcttgatccagatgctagcagagttagtt |
37076882 |
T |
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