View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_low_11 (Length: 523)
Name: NF16702_low_11
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 132 - 482
Target Start/End: Complemental strand, 31767961 - 31767611
Alignment:
| Q |
132 |
gttcactcattcaactttttctagctagtatatataagattaacaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaag |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31767961 |
gttcactcattcaactttttctagctagtatatataagattgacaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaag |
31767862 |
T |
|
| Q |
232 |
tgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaattt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
31767861 |
tgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcacaaattt |
31767762 |
T |
|
| Q |
332 |
caagtctcatggacttaaccttaaggacttggttgttctatctggtggacacacaattggattttccaaatgcactaactttagggacaggatctacaat |
431 |
Q |
| |
|
|||||| |||||||| |||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
31767761 |
caagtcacatggactaaaccttaaagatttagttgttctatctggtggtcacacaattggattttccaaatgcactaactttagaaataggatctacaat |
31767662 |
T |
|
| Q |
432 |
gacaccaacatagacaccaattttgctgccaatttgcaaaagacatgccct |
482 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31767661 |
gacaccaacctagacaccaactttgctgccaatttgcaaaagacatgccct |
31767611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 157 - 521
Target Start/End: Complemental strand, 31761187 - 31760819
Alignment:
| Q |
157 |
tagtatatataagattaacaactaacaaattttgctt----caattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagatt |
252 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31761187 |
tagtatatataaccctagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagatt |
31761088 |
T |
|
| Q |
253 |
caagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaacct |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31761087 |
caagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaacct |
31760988 |
T |
|
| Q |
353 |
taaggacttggttgttctatctggtggacacacaattggattttccaaatgcactaactttagggacaggatctacaatgacaccaacatagacaccaat |
452 |
Q |
| |
|
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31760987 |
taaagacttagttgttctatctggtggccacacaattggattttccaaatgcactaactttagagacaggatcttcaatgacaccaacatagacaccaat |
31760888 |
T |
|
| Q |
453 |
tttgctgccaatttgcaaaagacatgccctcgtattggcggcaacgataatttagcaccctttgcttct |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |||| |||| |
|
|
| T |
31760887 |
tttgctgccaatttgcaaaagacatgccctaaaatcggcggcgacgataatttagcaccatttgattct |
31760819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 175 - 521
Target Start/End: Original strand, 31749547 - 31749897
Alignment:
| Q |
175 |
caactaacaaattttgctt----caattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcaggg |
270 |
Q |
| |
|
||||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31749547 |
caactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagag |
31749646 |
T |
|
| Q |
271 |
atgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaaccttaaggacttggttgttct |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
31749647 |
atgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcaaaaatttcaagtcacatggactaaaccttaaggacttagttgttct |
31749746 |
T |
|
| Q |
371 |
atctggtggacacacaattggattttccaaatgcactaactttagggacaggatctacaatgacaccaacatagacaccaattttgctgccaatttgcaa |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
31749747 |
atctggtggacacacaattggattttccaaatgcactaactttagaaacagaatctacaatgacaccaacatagacaaaaaatttgcagccaatttgcaa |
31749846 |
T |
|
| Q |
471 |
aagacatgccctcgtattggcggcaacgataatttagcaccctttgcttct |
521 |
Q |
| |
|
|||||||| |||| || |||||| || |||||||||| || |||| |||| |
|
|
| T |
31749847 |
aagacatgtcctcaaatcggcggcgacaataatttagcgccatttgattct |
31749897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 174 - 521
Target Start/End: Complemental strand, 31753554 - 31753207
Alignment:
| Q |
174 |
acaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatg |
273 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
31753554 |
acaactaacaaattttgcatcaattaacagttgggcggtcacaaatattggtaccaagtgttactgggcagaagagattcaagatttgcaagcagagatg |
31753455 |
T |
|
| Q |
274 |
cagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaaccttaaggacttggttgttctatc |
373 |
Q |
| |
|
||||||||| ||||||||| || ||||||| || ||||||||||||||| ||||||| ||||||| ||||| |||||||| ||||| ||||||||||| |
|
|
| T |
31753454 |
cagcaaatataaatcttccaccggcattttttaacttctcacaactcatcgcaaattttcagtctcaaggactaaaccttaaagacttagttgttctatc |
31753355 |
T |
|
| Q |
374 |
tggtggacacacaattggattttccaaatgcactaactttagggacaggatctacaatgacaccaacatagacaccaattttgctgccaatttgcaaaag |
473 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| ||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
31753354 |
tggtggtcacacaattggattttcaagatgtactaactttagaagcaggatcttcaatgacaccaacataaacaccaattttgcagccaatttgcaaaag |
31753255 |
T |
|
| Q |
474 |
acatgccctcgtattggcggcaacgataatttagcaccctttgcttct |
521 |
Q |
| |
|
||||||||| | ||||||||| | || ||||||||||| |||| |||| |
|
|
| T |
31753254 |
acatgccctagaattggcggcgatgacaatttagcaccatttgattct |
31753207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 31768079 - 31768001
Alignment:
| Q |
14 |
agtttatagcattaccacaaccgaaactctaatttaaaaccatgtttaaatcaaactctaaatattaaagggcactcgt |
92 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
31768079 |
agtttatagcattaccgcaaccgaaactctaatttaaaaccatgtttaaatcaaacactaaatattgaaggacactcgt |
31768001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 27887869 - 27887907
Alignment:
| Q |
219 |
tattggtaccaagtgttactaggaagaagagattcaaga |
257 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
27887869 |
tattggtaccaagtgctactaggaagaagagatgcaaga |
27887907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University