View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_15 (Length: 495)
Name: NF16702_low_15
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 479
Target Start/End: Complemental strand, 428917 - 428446
Alignment:
| Q |
6 |
agaagcaaaggaaaaggataatggttcaaagatctgaaatcacaaaataaggaagcaagttcctcactattaatgtctattcactattccctgaaacgat |
105 |
Q |
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| T |
428917 |
agaaacaaaggaaaaggataatggttcaaagatctgaaatcacaaaataaggaagtaagttcctcactattaatgtctattcactattccctgaaacgat |
428818 |
T |
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| Q |
106 |
gcttatgatt-ttttggttgataagaaatttcacgattccattttaattttttatttccttannnnnnnnnnnntttatgaattttctactnnnnnnnnt |
204 |
Q |
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| T |
428817 |
gcttatgatttttttggttgataagaaatttcacgattccattttatttttttatttcctta----ctctctcttttatgaattttctactaaaaaaaat |
428722 |
T |
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| Q |
205 |
ctcttgtatgaatatcatagaaatnnnnnnntttatttctgttactgcgaaaatatattctaacttgaatttgagtccatctttaac----nnnnnnnnn |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
428721 |
ctcttgtatgaatatcatagaaat-aaaatttttatttctgttactgcgaaaatatattctaacttgaatttgagtccatctttaacaaaaaaaaaaaaa |
428623 |
T |
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| Q |
301 |
cacatgaaattgagtcacttgtaaaacnnnnnnnnnnnnngactttgcctctattgtagggttcttgtggtttaggagtcaacttttcaacaattaatca |
400 |
Q |
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| T |
428622 |
tacatgaaattgagtcacttgtaaaac--aaaacaaaaaagactttgcctctattgtagagttcttgtggtttaggagtcaacttttcaacaattaatca |
428525 |
T |
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| Q |
401 |
ttaccaagaacacaatcatttcaattaacaacttgttatgtcataatgtaaaataacctacaaattacaatgccataat |
479 |
Q |
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| T |
428524 |
ttaccaagaacacaatcatttcaattaacaacttgttatgtcataatgtaaaataacctacaaattacaatgccataat |
428446 |
T |
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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 30640600 - 30640674
Alignment:
| Q |
6 |
agaagcaaaggaaaaggataatggttcaaagatctgaaatcacaaaataaggaagcaagttcctcactattaatg |
80 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30640600 |
agaaacaaaggaaaaggataatggttcaaagatctgaaatcacaaaataaggaagtaagttcctcactattaatg |
30640674 |
T |
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