View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_16 (Length: 490)
Name: NF16702_low_16
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 480
Target Start/End: Complemental strand, 43409164 - 43408698
Alignment:
| Q |
20 |
gctgaaggcagtaatatcaatagcaaaacaaggtttggttgttgtgaaggctgttcctactattccttgtccattaaaaaggtgatactcactgcacgct |
119 |
Q |
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| T |
43409164 |
gctgaaggcagtaatatcaatagcaaaacaaggtttggttgttgtgaaggctgttcctactattccttgtccattaaaaaggtgatactcactgcacgct |
43409065 |
T |
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| Q |
120 |
tcttggaatcccaatacatccatgtcaccaacataacaagctgaatcaaccgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccac |
219 |
Q |
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| T |
43409064 |
tcttggaatcccaatacatccatgtcaccaacataacaagctgaatcaaccgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccac |
43408965 |
T |
|
| Q |
220 |
tacttccctttcctcctccttgttgttgttgtaggcaaggagcccatgttagtgctaatggtaaattgtgcgtcttgcacactgaagccaacacttccat |
319 |
Q |
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| T |
43408964 |
tacttccctttcctcctccttgttgttgttgtaggcaaggagcccatgttagtgctaatggtaaattgtgcgtcttgcacactgacgccaacacttccat |
43408865 |
T |
|
| Q |
320 |
tatctcgttcacggctgcttcatatagctcttcaaatacctaattattcattatcatatcatttttagaaacaattttatttagtttttgttgatttaat |
419 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
43408864 |
tatctcgttcaccgctgcttcatatagctcttcaaatacctaattattcattatcatatcatttttagaaacaattttatatagtttttgttgatctaat |
43408765 |
T |
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| Q |
420 |
caaatccagtactatgatctga---tgattgtttgc---ttacctttactgcttgtgggatattcat |
480 |
Q |
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| T |
43408764 |
caaatccagtactatgatctgatgatgattgtttgctaattacctttactgcttgtgggatattcat |
43408698 |
T |
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