View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_low_18 (Length: 471)
Name: NF16702_low_18
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_18 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0006 (7 HSPs) |
| | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0460 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 454
Target Start/End: Complemental strand, 121086 - 120639
Alignment:
| Q |
21 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgtgctaagtagaatattatcaca--aaattatcaatgaataacacttaaccaacgtaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
121086 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgtgctaagtagaatattatcacataaaattatcaatgaagaacacttaaccaacgtaat |
120987 |
T |
|
| Q |
119 |
agacaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
120986 |
agacaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgtagagatattgtgctcaacatttttggaa |
120887 |
T |
|
| Q |
219 |
ctttcttggtgtttcaat------------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccc |
306 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||||||| | |||| || || | |||||||||||| |||||||||||||| |||| |
|
|
| T |
120886 |
ctttcttggtgtttcaatggctctgccttaaataactctattcttggacatttaaacaaattaatttctttcaatgatttgcattgaagagaatggaccc |
120787 |
T |
|
| Q |
307 |
caacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgac |
406 |
Q |
| |
|
|||||||||||||||||| | ||||||| | | ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
120786 |
caacaaagaatgccttaagtctggtcaaattataaagttcaatggaagttcaatgaggaaacacaaatttaactatctcatctgttccttcttcctttgc |
120687 |
T |
|
| Q |
407 |
aacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
454 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
120686 |
aacaatttcttcaatcccacagttacttacatgaagtctttgaagttg |
120639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 21 - 460
Target Start/End: Complemental strand, 21817400 - 21816947
Alignment:
| Q |
21 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgtgctaagtagaatattatcaca--aaattatcaatgaataacacttaaccaacgtaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||||||||| |
|
|
| T |
21817400 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgtgctaagtagaatattagcacataaaattatcaatgaataacactcaatcaacgtaat |
21817301 |
T |
|
| Q |
119 |
agacaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaa |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| |
|
|
| T |
21817300 |
agacaagcttttgaaaaatatgatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgagcacatcatttctggaa |
21817201 |
T |
|
| Q |
219 |
ctttcttggtgtttcaa------------taatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccc |
306 |
Q |
| |
|
||||||| |||| |||| |||||| |||| ||||||||| | |||| || || ||||||||||||||||||||||||||||||||| |
|
|
| T |
21817200 |
ctttctttgtgtctcaaagactctgccttaaatagcactatttttggacatcgaaacaagttgattgttttcaatgatttacattgaagagaatgaaccc |
21817101 |
T |
|
| Q |
307 |
caacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgac |
406 |
Q |
| |
|
|||||||||||||||||| ||||||||| | | |||||||||||| || |||||| ||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
21817100 |
caacaaagaatgccttaagtttggtcaaatcataaagtttaatggatgttaaatgaagaaacacaaatttaaccatctcatctggtccttcttccttggc |
21817001 |
T |
|
| Q |
407 |
aacaatttcatcaatcccacagttacttattcgaagactttgaagttgtttcat |
460 |
Q |
| |
|
|||||||| ||||||||||| ||||||| | |||||||||||||||| ||||| |
|
|
| T |
21817000 |
cacaatttcttcaatcccacatttacttacttgaagactttgaagttgcttcat |
21816947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 156 - 450
Target Start/End: Original strand, 22273407 - 22273713
Alignment:
| Q |
156 |
cttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagct |
243 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| |||||| ||||| ||||| | ||||||| ||||||||| || |||| |
|
|
| T |
22273407 |
cttacctcttcaatcacaaaaagaggttgatattttgaaatattgagctcatcatttctaatgctttcttcgtgtttcaaaggttctgccttaaaaagct |
22273506 |
T |
|
| Q |
244 |
ctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaag |
343 |
Q |
| |
|
|||||||||||||| || | | | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || | ||| |
|
|
| T |
22273507 |
ctatatttggacatgcaaagagatcgatcgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagtttggtcaaataattaag |
22273606 |
T |
|
| Q |
344 |
tttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaaga |
443 |
Q |
| |
|
| | ||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| | || || || ||||||| ||||||| |
|
|
| T |
22273607 |
tgtgatggatgttaaatgaggaaacacaaatttaactatctcatctgttccatcttccttggcaacaatttcttggatgccgcatttacttactcgaaga |
22273706 |
T |
|
| Q |
444 |
ctttgaa |
450 |
Q |
| |
|
||||||| |
|
|
| T |
22273707 |
ctttgaa |
22273713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 107 - 454
Target Start/End: Complemental strand, 13596657 - 13596298
Alignment:
| Q |
107 |
aaccaacgtaatagacaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctca |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || || |
|
|
| T |
13596657 |
aaccaacgtaatagacaagcttttgtaaaatatgacatttgacactactcttacctcttcaatcacaaaaagaggttgatacgttgagatattaagcaca |
13596558 |
T |
|
| Q |
207 |
acatttttggaactttcttggtgtttcaat------------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaa |
294 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |||||||| | ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
13596557 |
tcatttttggaactttcttggtgtctcaaaggctctgccttaaatagctctattgttggacatgcgaacaacttgatcgttttcaatgatttacattgaa |
13596458 |
T |
|
| Q |
295 |
gagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttcc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13596457 |
gagaatgaaccccaacaaagaatgccttaagtttggtcaagtacttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttcc |
13596358 |
T |
|
| Q |
395 |
ttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
13596357 |
ttcttccttgacaacaatttcatcaatcccacagttacttacttgaagactttgaagttg |
13596298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 151 - 454
Target Start/End: Complemental strand, 13677774 - 13677459
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
13677774 |
ctactcttacctcttcaaacacaaaaagaggttgataagttgagatattttgctcaacatttttggaactttcttggagtttcaatggctctgccttaaa |
13677675 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
13677674 |
tagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaatta |
13677575 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13677574 |
tcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttacaa |
13677475 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13677474 |
gaagactttgaagttg |
13677459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 151 - 454
Target Start/End: Complemental strand, 13552878 - 13552563
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||||| |||| || |
|
|
| T |
13552878 |
ctactcttacctcttcaaacacaaaaagaggttgataagttgagatattgtgctcaacatttctggaactctcttggtgtctcaaaggctctgccttaaa |
13552779 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||||||| ||||||||| | |||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13552778 |
tagctctatttttggacatcgaaacaagttgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagtac |
13552679 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||| | ||||||||| | ||||| | |
|
|
| T |
13552678 |
ttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatatgtttcttcttccttggccacaatttcttgaatcccacactgacttactt |
13552579 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13552578 |
gaagactttgaagttg |
13552563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 141 - 454
Target Start/End: Complemental strand, 20378076 - 20377751
Alignment:
| Q |
141 |
atatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat---- |
236 |
Q |
| |
|
|||||| || |||| ||||||||||||||| ||||||||| ||||||||||||||||||| || || ||||| ||||||||||||||||| |||| |
|
|
| T |
20378076 |
atatttaacgctacacttacctcttcaatctcaaaaagaggttgatatgttgagatattgagcacatcatttctggaactttcttggtgtctcaaagtct |
20377977 |
T |
|
| Q |
237 |
--------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaattt |
328 |
Q |
| |
|
||||||||||| ||||||||| || |||| | || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
20377976 |
ctgccttaaatagctctatttttggacatccaaacaaatgaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttcagttt |
20377877 |
T |
|
| Q |
329 |
ggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacag |
428 |
Q |
| |
|
|||||| || | |||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||| || |||| ||||| | ||||||||| |
|
|
| T |
20377876 |
ggtcaaataatgaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatctggtccatcttccctggcaacgatttcttgaatcccacat |
20377777 |
T |
|
| Q |
429 |
ttacttattcgaagactttgaagttg |
454 |
Q |
| |
|
||| ||| | ||||| |||||||||| |
|
|
| T |
20377776 |
ttaattacttgaagattttgaagttg |
20377751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 156 - 454
Target Start/End: Original strand, 19189190 - 19189500
Alignment:
| Q |
156 |
cttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagct |
243 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||| || || ||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
19189190 |
cttacctcttcaatcacaaaaagaggttgatacgttgagatattgagcacatcatttctggaactttcatggtgtctcaaagcctctgacttaaatagct |
19189289 |
T |
|
| Q |
244 |
ctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaag |
343 |
Q |
| |
|
|||| ||||||||||| |||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | |||||| |
|
|
| T |
19189290 |
ctatttttggacattcgaacaaatcgatcgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgttcaag |
19189389 |
T |
|
| Q |
344 |
tttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaaga |
443 |
Q |
| |
|
| ||||||| || || || ||||||| ||||||||||||||||||| ||||||||||||| |||||||||| | || ||||| ||||||| ||||||| |
|
|
| T |
19189390 |
tataatggatgttaactgtggaaacaataatttaaccatctcatctggtccttcttccttggcaacaatttcttggatgccacatttacttactcgaaga |
19189489 |
T |
|
| Q |
444 |
ctttgaagttg |
454 |
Q |
| |
|
||||||||||| |
|
|
| T |
19189490 |
ctttgaagttg |
19189500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 162 - 454
Target Start/End: Original strand, 20510532 - 20510836
Alignment:
| Q |
162 |
tcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctctatat |
249 |
Q |
| |
|
|||||| |||||||||| | || |||||| ||||||||| || || ||||| ||||||||||||||||| |||| ||||||| ||| | |
|
|
| T |
20510532 |
tcttcattcacaaaaagcggttcatatgtcgagatattgagcacatcatttctggaactttcttggtgtctcaaagtctctaccttaaatagctttattt |
20510631 |
T |
|
| Q |
250 |
ttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaat |
349 |
Q |
| |
|
|||||||| || |||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| | | ||||||||| |
|
|
| T |
20510632 |
ttggacatccaaacaaattgattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttcagtttggtcaaattatgaagtttaat |
20510731 |
T |
|
| Q |
350 |
ggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttga |
449 |
Q |
| |
|
| | |||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||| | ||||||||| ||| ||| | ||||||||||| |
|
|
| T |
20510732 |
gaatgtcaaatgaggaaacacaaaattaaccatctcatctggtccatcttccttggcaacaatttcttgaatcccacatttaattacttgaagactttga |
20510831 |
T |
|
| Q |
450 |
agttg |
454 |
Q |
| |
|
||||| |
|
|
| T |
20510832 |
agttg |
20510836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 140 - 454
Target Start/End: Original strand, 15895733 - 15896059
Alignment:
| Q |
140 |
tatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat--- |
236 |
Q |
| |
|
|||||||||| |||| ||||| ||||| ||||||||||||| |||||||||||||||||| |||||| ||||| || |||||||||||||| |||| |
|
|
| T |
15895733 |
tatatttgacgctacccttacttcttcgatcacaaaaagaggttgatatgttgagatattttgctcatcatttctgaaactttcttggtgtctcaaagtt |
15895832 |
T |
|
| Q |
237 |
---------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatt |
327 |
Q |
| |
|
||||||||||| || |||||| || |||| | || |||||||||||||||||||||| ||||| ||||| |||||||||||||| | || |
|
|
| T |
15895833 |
tctgccttaaatagctctattttcggacatccagacaagatgattgttttcaatgatttacattgaagggaatggaccccgacaaagaatgccttcagtt |
15895932 |
T |
|
| Q |
328 |
tggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccaca |
427 |
Q |
| |
|
|||||| | |||||| ||||||| || ||||||||||||| ||||| ||| |||||||| ||||||| |||| | |||||||||| | |||| |||| |
|
|
| T |
15895933 |
gggtcaaacaatcaagtgtaatggatgttaaatgaggaaacataaattgaactatctcatcaattccttcctcctcggcaacaatttcttgaatctcaca |
15896032 |
T |
|
| Q |
428 |
gttacttattcgaagactttgaagttg |
454 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
15896033 |
cttacttactcgaagactttgaagttg |
15896059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 157 - 454
Target Start/End: Original strand, 16453771 - 16454077
Alignment:
| Q |
157 |
ttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat---------aatagctctat |
247 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| || || || || ||||||||||||||||| | | ||||||||||| |
|
|
| T |
16453771 |
ttacctcttcaatcacaaaaagaggttgatacgttgagatattgagcacatcacttctggaactttcttggtgtcttagctctgtcttaaatagctctat |
16453870 |
T |
|
| Q |
248 |
atttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagttta |
347 |
Q |
| |
|
||||||||| || |||| | || ||||||| |||||||||||||| |||||||| ||||||||||||||||| | || | || ||||||| || |
|
|
| T |
16453871 |
ttttggacatccaaacaagtaaattgttttcaacgatttacattgaagtgaatgaacaccaacaaagaatgccttcagcttaggtaaaagttcaagtcta |
16453970 |
T |
|
| Q |
348 |
atggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagacttt |
447 |
Q |
| |
|
||| | || ||||||| ||||||||| || || ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
16453971 |
atgaatgttaaatgagaaaacacaaagtttactatctcatttgttccttcttccttggcaacaatttcttcaatcccacagttacttactcgaagacttt |
16454070 |
T |
|
| Q |
448 |
gaagttg |
454 |
Q |
| |
|
||||||| |
|
|
| T |
16454071 |
gaagttg |
16454077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 157 - 454
Target Start/End: Original strand, 16462928 - 16463234
Alignment:
| Q |
157 |
ttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat---------aatagctctat |
247 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| || || || || ||||||||||||||||| | | ||||||||||| |
|
|
| T |
16462928 |
ttacctcttcaatcacaaaaagaggttgatacgttgagatattgagcacatcacttctggaactttcttggtgtcttagctctgtcttaaatagctctat |
16463027 |
T |
|
| Q |
248 |
atttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagttta |
347 |
Q |
| |
|
||||||||| || |||| | || ||||||| |||||||||||||| |||||||| ||||||||||||||||| | || | || ||||||| || |
|
|
| T |
16463028 |
ttttggacatccaaacaagtaaattgttttcaacgatttacattgaagtgaatgaacaccaacaaagaatgccttcagcttaggtaaaagttcaagtcta |
16463127 |
T |
|
| Q |
348 |
atggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagacttt |
447 |
Q |
| |
|
||| | || ||||||| ||||||||| || || ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
16463128 |
atgaatgttaaatgagaaaacacaaagtttactatctcatttgttccttcttccttggcaacaatttcttcaatcccacagttacttactcgaagacttt |
16463227 |
T |
|
| Q |
448 |
gaagttg |
454 |
Q |
| |
|
||||||| |
|
|
| T |
16463228 |
gaagttg |
16463234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 249 - 454
Target Start/End: Complemental strand, 13517292 - 13517087
Alignment:
| Q |
249 |
tttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaa |
348 |
Q |
| |
|
||||||||| || |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | ||||||| ||| |
|
|
| T |
13517292 |
tttggacatccaaacaaatcgatctttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgttcaagtataa |
13517193 |
T |
|
| Q |
349 |
tggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttg |
448 |
Q |
| |
|
|||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || ||||| ||||||| |||||||||||| |
|
|
| T |
13517192 |
tggatgttaattgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacatttacttactcgaagactttg |
13517093 |
T |
|
| Q |
449 |
aagttg |
454 |
Q |
| |
|
|||||| |
|
|
| T |
13517092 |
aagttg |
13517087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 151 - 454
Target Start/End: Complemental strand, 20486583 - 20486268
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||| ||||| |||| | |||| || | |||| || |
|
|
| T |
20486583 |
ctactcttacctcttcaagcacaaaaagaggttgagatgttgagatattgagctcatcatttacggaattctctttgtatctcaaaggctctgccttaaa |
20486484 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||||||| ||||||||| |||| || | ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | | |
|
|
| T |
20486483 |
tagctctatttttggacatccatagaagtggatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaattt |
20486384 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
| |||| ||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| ||||| | ||||| | |
|
|
| T |
20486383 |
tgaagtgtaatggatgttaaatgctgaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaataccacactgacttactt |
20486284 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20486283 |
taagactttgaagttg |
20486268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 274 - 421
Target Start/End: Original strand, 16491985 - 16492132
Alignment:
| Q |
274 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaa |
373 |
Q |
| |
|
|||||| ||| ||||||||||||||||| || ||||||||||||||||||| ||||| || | ||||||| ||||||| || ||||||| ||||||||| |
|
|
| T |
16491985 |
ttttcagtgacttacattgaagagaatgtacaccaacaaagaatgccttaagtttgggtaaatgttcaagtctaatggatgttaaatgagaaaacacaaa |
16492084 |
T |
|
| Q |
374 |
tttaaccatctcatctgttccttcttccttgacaacaatttcatcaat |
421 |
Q |
| |
|
| || |||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
16492085 |
ctgtactatctcatctgttccttcttcattggcgacaatttcttcaat |
16492132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 13596714 - 13596672
Alignment:
| Q |
21 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgt |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13596714 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgt |
13596672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 15895599 - 15895664
Alignment:
| Q |
60 |
ttgtgctaagtagaatattatcaca--aaattatcaatgaataacacttaaccaacgtaatagaca |
123 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
15895599 |
ttgtgttaagtagaatattatcacataaaactatcaatcaataacaatcaaccaacgtaatagaca |
15895664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 16491872 - 16491956
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
235 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||| ||||| |||||| ||||| |||| | |||||||||| ||| |||| |
|
|
| T |
16491872 |
ctacccttacctcgtcaatcacaaaaagaggttgatacgttgaaatattgagctcattatttcggaaactttcttgttgtctcaa |
16491956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 13517397 - 13517318
Alignment:
| Q |
156 |
cttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
235 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||| ||||| || || | || |||||||||||| |||| |
|
|
| T |
13517397 |
cttacctcttcaatcacaaaaagaggttgatattcagggatattgagctcatcaattcttgagctttcttggtgtctcaa |
13517318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 211050 - 210835
Alignment:
| Q |
21 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgtgctaagtagaatattatcacaaaattatcaatgaataacacttaaccaacgtaatag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
211050 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgtgctaagtagaatattatcacaaaattatcaatgaataacacttaaccaacgtaatag |
210951 |
T |
|
| Q |
121 |
acaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaact |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
210950 |
acaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaact |
210851 |
T |
|
| Q |
221 |
ttcttggtgtttcaat |
236 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
210850 |
ttcttggtgtttcaat |
210835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 151 - 454
Target Start/End: Complemental strand, 175356 - 175041
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
175356 |
ctactcttacctcttcaaacacaaaaagaggttgataagttgagatattttgctcaacatttttggaactttcttggagtttcaatggctctgccttaaa |
175257 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
175256 |
tagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaatta |
175157 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
175156 |
tcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttacaa |
175057 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
175056 |
gaagactttgaagttg |
175041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 151 - 454
Target Start/End: Complemental strand, 190764 - 190449
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
190764 |
ctactcttacctcttcaaacacaaaaagaggttgataagttgagatattttgctcaacatttttggaactttcttggagtttcaatggctctgccttaaa |
190665 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| | |
|
|
| T |
190664 |
tagctctattcttggacatttaaacaacttgatggttttcaatgatttacattgaagagaatggaccccaacaaagaatgctttaagtttggtcaaatta |
190565 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
190564 |
tcaagttcaatggaagtcaaatgaggaaacacaaatttaaccatctcatctggtccttcttccttgacaacaatttcttcaatcccacagttacttacaa |
190465 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
190464 |
gaagactttgaagttg |
190449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 107 - 387
Target Start/End: Complemental strand, 3942 - 3650
Alignment:
| Q |
107 |
aaccaacgtaatagacaagcttttgaaaaatattatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctca |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || || |
|
|
| T |
3942 |
aaccaacgtaatagacaagcttttgtaaaatatgacatttgacactactcttacctcttcaatcacaaaaagaggttgatacgttgagatattaagcaca |
3843 |
T |
|
| Q |
207 |
acatttttggaactttcttggtgtttcaat------------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaa |
294 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |||||||| | ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
3842 |
tcatttttggaactttcttggtgtctcaaaggctctgccttaaatagctctattgttggacatgcgaacaacttgatcgttttcaatgatttacattgaa |
3743 |
T |
|
| Q |
295 |
gagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3742 |
gagaatgaaccccaacaaagaatgccttaagtttggtcaagtacttaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcat |
3650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 162 - 454
Target Start/End: Complemental strand, 114172 - 113868
Alignment:
| Q |
162 |
tcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctctatat |
249 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| || || ||||| ||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
114172 |
tcttcattcacaaaaagaggttgatatgttgagatattgagcacatcatttctggaactttcttggtgtctcaaagtctctgccttaaatagctctattt |
114073 |
T |
|
| Q |
250 |
ttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaat |
349 |
Q |
| |
|
|||||||| || |||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| | | ||||||||| |
|
|
| T |
114072 |
ttggacatccaaacaaattaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgccttaagtttggtcaaattattaagtttaat |
113973 |
T |
|
| Q |
350 |
ggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttga |
449 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||| ||| | ||||||||||| |
|
|
| T |
113972 |
gaatgtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttggcaacaatttcttgaatcccacatttaattacttgaagactttga |
113873 |
T |
|
| Q |
450 |
agttg |
454 |
Q |
| |
|
||||| |
|
|
| T |
113872 |
agttg |
113868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 3999 - 3957
Alignment:
| Q |
21 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgt |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3999 |
cctgcaagtagaatattatcagcttttgaaacaatcaagttgt |
3957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 454
Target Start/End: Complemental strand, 210831 - 210773
Alignment:
| Q |
396 |
tcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
454 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
210831 |
tcttcctttgcaacaatttcttcaatcccacagttacttacatgaagactttgaagttg |
210773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 159 - 454
Target Start/End: Complemental strand, 42684 - 42377
Alignment:
| Q |
159 |
acctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctcta |
246 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
42684 |
acctcttcaatcacaaaaagaggttgatatgttgagatattaagcacatcatttttggaactttcttggtgtctcaaaggctctgccttaaatagctcta |
42585 |
T |
|
| Q |
247 |
tatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagttt |
346 |
Q |
| |
|
| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |
|
|
| T |
42584 |
ttgttggacatgtgaacaacttgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagtactcaaggtt |
42485 |
T |
|
| Q |
347 |
aatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| | ||||||||| | ||||| | |||||||| |
|
|
| T |
42484 |
aatggaagtcaaatgaggaaacacaaatttaaccatctcatatgttccttcttccttggccacaatttcttgaatcccacactgacttacttgaagactt |
42385 |
T |
|
| Q |
447 |
tgaagttg |
454 |
Q |
| |
|
|||||||| |
|
|
| T |
42384 |
tgaagttg |
42377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 141 - 454
Target Start/End: Complemental strand, 48378 - 48053
Alignment:
| Q |
141 |
atatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat---- |
236 |
Q |
| |
|
|||||| || |||| ||||||||||||||| ||||||||| ||||||||||||||||||| || || ||||| ||||||||||||||||| |||| |
|
|
| T |
48378 |
atatttaacgctacacttacctcttcaatctcaaaaagaggttgatatgttgagatattgagcacatcatttctggaactttcttggtgtctcaaagtct |
48279 |
T |
|
| Q |
237 |
--------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaattt |
328 |
Q |
| |
|
||||||||||| ||||||||| || |||| | || ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||| |
|
|
| T |
48278 |
ctgccttaaatagctctatttttggacatccaaacaaatgaattgttttcaatgatttgcattgaagagaatggaccccaacaaagaatgcctttagttt |
48179 |
T |
|
| Q |
329 |
ggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacag |
428 |
Q |
| |
|
|||||| | | |||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||| || |||| ||||| | ||||||||| |
|
|
| T |
48178 |
ggtcaaattattaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatctggtccatcttccctggcaacgatttcttgaatcccacat |
48079 |
T |
|
| Q |
429 |
ttacttattcgaagactttgaagttg |
454 |
Q |
| |
|
||| ||| | ||||| |||||||||| |
|
|
| T |
48078 |
ttaattacttgaagattttgaagttg |
48053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 158 - 454
Target Start/End: Original strand, 38052515 - 38052823
Alignment:
| Q |
158 |
tacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctct |
245 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || |||||| |||| ||||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
38052515 |
tacctcttcaatcacaaaaaggggttgatattgagatatattgacctcatcatttgtggagctttcttggtgtttcaaaggttctgccttaaatagctct |
38052614 |
T |
|
| Q |
246 |
atatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtt |
345 |
Q |
| |
|
|| ||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | | ||||| |
|
|
| T |
38052615 |
atttttggacatccgaacaacttgatcattttcaatgatttacattgaagagaatgaactccaacaaagaatgccttaagtttggtcaagaaattaagtt |
38052714 |
T |
|
| Q |
346 |
taatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagact |
445 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| | | |||||| |
|
|
| T |
38052715 |
caatggatgtcaaatgaggaaacacaaatttaaccatttcatctgttccttcttccttggcaacaatttcttcaatcccacagttactgactagaagaca |
38052814 |
T |
|
| Q |
446 |
ttgaagttg |
454 |
Q |
| |
|
||||||||| |
|
|
| T |
38052815 |
ttgaagttg |
38052823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 156 - 454
Target Start/End: Original strand, 30702565 - 30702872
Alignment:
| Q |
156 |
cttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagct |
243 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||| || ||||||||| || |||| ||||||| |
|
|
| T |
30702565 |
cttacctcttcaatcacaaaaagaggttgatattttgagatattgagctcatcatttcaggtgctttcttggagtctcaaaggttctgctttaaatagct |
30702664 |
T |
|
| Q |
244 |
ctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaag |
343 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||||||| ||||| ||| |||||||| |
|
|
| T |
30702665 |
ctatatttggacatgaaaacaactttatcgttttcaatgatttacattgaagagaatggaccccaagaaaaaatgccttaagtttgggcaaatattcaag |
30702764 |
T |
|
| Q |
344 |
tttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaaga |
443 |
Q |
| |
|
| | ||| || ||| ||||||||||||||||||| ||||| | |||| |||||||| |||||||||| | ||||||||| |||||| | ||||| |
|
|
| T |
30702765 |
cgtgagggatgttaaacgaggaaacacaaatttaactatctctttcgttc---cttccttggcaacaatttcttgaatcccacaattacttgcttgaaga |
30702861 |
T |
|
| Q |
444 |
ctttgaagttg |
454 |
Q |
| |
|
||||||||||| |
|
|
| T |
30702862 |
ctttgaagttg |
30702872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 140 - 454
Target Start/End: Original strand, 38054695 - 38055021
Alignment:
| Q |
140 |
tatatttgacactactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat--- |
236 |
Q |
| |
|
||||||| || |||| | |||||||||||||||||| |||| ||||||| ||||||||||| ||||| ||||| | || |||||||| ||| |||| |
|
|
| T |
38054695 |
tatatttaacgctacccatacctcttcaatcacaaagagaggttgatattttgagatattgagctcatcatttcttgagctttcttgttgtctcaaaggt |
38054794 |
T |
|
| Q |
237 |
---------aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatt |
327 |
Q |
| |
|
||||| ||||| |||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||| ||||| || |
|
|
| T |
38054795 |
tcttccttaaatagatctattcttggacatctgaacaacttgattgttttcaaagatttacattgaagagaatgagccccaacaaagaatgtcttaagtt |
38054894 |
T |
|
| Q |
328 |
tggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccaca |
427 |
Q |
| |
|
||| ||| | ||||||| | ||||| || ||||||||||||||||| ||||| |||||| ||||||||| |||||| |||| ||||| | ||||||||| |
|
|
| T |
38054895 |
tgggcaaatcttcaagtgtgatggatgttaaatgaggaaacacaaacttaactatctcacatgttccttcgtccttggcaacgatttcttgaatcccaca |
38054994 |
T |
|
| Q |
428 |
gttacttattcgaagactttgaagttg |
454 |
Q |
| |
|
|||||||| | |||||||||||||| |
|
|
| T |
38054995 |
gttacttactttcagactttgaagttg |
38055021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 274 - 454
Target Start/End: Original strand, 20805914 - 20806094
Alignment:
| Q |
274 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtattcaagtttaatggaagtcaaatgaggaaacacaaa |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20805914 |
ttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagtactcaaggttaatggaagtcaaatgaggaaacacaaa |
20806013 |
T |
|
| Q |
374 |
tttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttgaagttg |
454 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || ||||| | ||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
20806014 |
tttaaccatctcatatgttccttcttccttggccacgatttcttgaatcccacacttacttacttgaagactttgaagttg |
20806094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 151 - 454
Target Start/End: Original strand, 20771851 - 20772166
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||| |||||||||||| |||| || |
|
|
| T |
20771851 |
ctacccttacctcttcaatcacaaaaagaggttgatattttgagatattcagctcatcatttttggagctttcttggtgtctcaaaggttcttccttaaa |
20771950 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | | |
|
|
| T |
20771951 |
tagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgt |
20772050 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
| |||| ||||||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || |||| ||||||| || |
|
|
| T |
20772051 |
ttaagtataatggatgttaactgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacttttacttactc |
20772150 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20772151 |
gaagactttgaagttg |
20772166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 151 - 454
Target Start/End: Original strand, 20781645 - 20781960
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||| |||||||||||| |||| || |
|
|
| T |
20781645 |
ctacccttacctcttcaatcacaaaaagaggttgatattttgagatattcagctcatcatttttggagctttcttggtgtctcaaaggttcttccttaaa |
20781744 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||||||| ||||||||| | ||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||| | | |
|
|
| T |
20781745 |
tagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatggaccccaacaaagaatgccttaagttttggcaaatgt |
20781844 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
| |||| ||||||| || || || ||||||||||||||||| ||||| |||||||| ||||||||| |||||||||| | || |||| ||||||| || |
|
|
| T |
20781845 |
ttaagtataatggatgttaactgtggaaacacaaatttaactatctcttctgttccatcttccttggcaacaatttcttggatgccacttttacttactc |
20781944 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20781945 |
gaagactttgaagttg |
20781960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 162 - 454
Target Start/End: Original strand, 20834702 - 20835006
Alignment:
| Q |
162 |
tcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aatagctctatat |
249 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| || || ||||| ||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
20834702 |
tcttcattcacaaaaagaggttgatatgttgagatattgagcacatcatttctggaactttcttggtgtctcaaagtctctgccttaaatagctctattt |
20834801 |
T |
|
| Q |
250 |
ttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaa-gtattcaagtttaa |
348 |
Q |
| |
|
|||||||| || |||| || || ||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
20834802 |
ttggacatccaaacaaattaattgttttcaatgatttgcatcgaagagaatggaccccaacaaagaatgccttaagtttggtcaaagtatg-aagtttaa |
20834900 |
T |
|
| Q |
349 |
tggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattcgaagactttg |
448 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||| | ||| | |||| || |||||||||| | ||||||||| ||| ||| | |||||||||| |
|
|
| T |
20834901 |
tgaatgtcaaatgaggaaacacaaatttaaccatctcatccggtccatattccctggcaacaatttcttgaatcccacatttaattactagaagactttg |
20835000 |
T |
|
| Q |
449 |
aagttg |
454 |
Q |
| |
|
|||||| |
|
|
| T |
20835001 |
aagttg |
20835006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 237 - 460
Target Start/End: Original strand, 20769000 - 20769223
Alignment:
| Q |
237 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
336 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
20769000 |
aatagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatgacccccatcaaagaatgccttaagtttggtcaagc |
20769099 |
T |
|
| Q |
337 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
436 |
Q |
| |
|
| | |||| ||||||| || || || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| | ||||||||| ||||| | |
|
|
| T |
20769100 |
aatgaagtgtaatggatgttaactgcggaaacacaaatttaactatctcatttgttccttcttccttgccaacaatttcttgaatcccacatttactaac |
20769199 |
T |
|
| Q |
437 |
tcgaagactttgaagttgtttcat |
460 |
Q |
| |
|
||||||||||||||| || ||||| |
|
|
| T |
20769200 |
tcgaagactttgaagctgcttcat |
20769223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 237 - 460
Target Start/End: Original strand, 20778794 - 20779017
Alignment:
| Q |
237 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
336 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
20778794 |
aatagctctatttttggacatcgaaacaacttgattgttttcaatgatttacattgaagagaatgacccccatcaaagaatgccttaagtttggtcaagc |
20778893 |
T |
|
| Q |
337 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
436 |
Q |
| |
|
| | |||| ||||||| || || || ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| | ||||||||| ||||| | |
|
|
| T |
20778894 |
aatgaagtgtaatggatgttaactgcggaaacacaaatttaactatctcatttgttccttcttccttgccaacaatttcttgaatcccacatttactaac |
20778993 |
T |
|
| Q |
437 |
tcgaagactttgaagttgtttcat |
460 |
Q |
| |
|
||||||||||||||| || ||||| |
|
|
| T |
20778994 |
tcgaagactttgaagctgcttcat |
20779017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 237 - 454
Target Start/End: Original strand, 20841556 - 20841774
Alignment:
| Q |
237 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
336 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||| | |
|
|
| T |
20841556 |
aatagctctatttttggacatccgaacaaatttattgttttcaatgatttacattgaagagaatgggccacaacaaagaatgccttaagtttgggcaaat |
20841655 |
T |
|
| Q |
337 |
attcaagtttaatggaagtcaaatg-aggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttactta |
435 |
Q |
| |
|
||| |||| ||||||| || || || |||||||||||||||||| ||||| | |||| |||| |||| ||||||||| | |||||||||| ||| || |
|
|
| T |
20841656 |
attgaagtataatggatgttaactgcaggaaacacaaatttaactatctcctttgttgcttcctcctctttaacaatttcttgaatcccacagctacgta |
20841755 |
T |
|
| Q |
436 |
ttcgaagactttgaagttg |
454 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20841756 |
ctggaagactttgaagttg |
20841774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 237 - 454
Target Start/End: Original strand, 20849650 - 20849868
Alignment:
| Q |
237 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
336 |
Q |
| |
|
||||||||||| ||||||||| | |||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||| | |
|
|
| T |
20849650 |
aatagctctatttttggacatccgaacaaatttattgttttcaatgatttacattgaagagaatgggccacaacaaagaatgccttaagtttgggcaaat |
20849749 |
T |
|
| Q |
337 |
attcaagtttaatggaagtcaaatg-aggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttactta |
435 |
Q |
| |
|
||| |||| ||||||| || || || |||||||||||||||||| ||||| | |||| |||| |||| ||||||||| | |||||||||| ||| || |
|
|
| T |
20849750 |
attgaagtataatggatgttaactgcaggaaacacaaatttaactatctcctttgttgcttcctcctctttaacaatttcttgaatcccacagctacgta |
20849849 |
T |
|
| Q |
436 |
ttcgaagactttgaagttg |
454 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20849850 |
ctggaagactttgaagttg |
20849868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 20768902 - 20768986
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
235 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||| ||||||||| ||||| || || | || |||| ||||||| |||| |
|
|
| T |
20768902 |
ctacacttacctcttcaattacaaaaagaggttgatattgagagatattgagctcatcaattcttgagcttttttggtgtctcaa |
20768986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 20778696 - 20778780
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
235 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||||||| ||||||||| ||||| || || | || |||| ||||||| |||| |
|
|
| T |
20778696 |
ctacacttacctcttcaattacaaaaagaggttgatattgagagatattgagctcatcaattcttgagcttttttggtgtctcaa |
20778780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 20841478 - 20841542
Alignment:
| Q |
171 |
acaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
235 |
Q |
| |
|
|||||||||| ||||| |||||||||||| | ||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
20841478 |
acaaaaagaggttgattagttgagatattgagatcatcatttttggaagtttctcggtgtctcaa |
20841542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 20849572 - 20849636
Alignment:
| Q |
171 |
acaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaa |
235 |
Q |
| |
|
|||||||||| ||||| |||||||||||| | ||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
20849572 |
acaaaaagaggttgattagttgagatattgagatcatcatttttggaagtttctcggtgtctcaa |
20849636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 237 - 454
Target Start/End: Original strand, 32466 - 32683
Alignment:
| Q |
237 |
aatagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagt |
336 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32466 |
aatagctctattgttggacatgtgaacaacatgatcgttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaagtttggtcaagt |
32565 |
T |
|
| Q |
337 |
attcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttat |
436 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| | ||||| |
|
|
| T |
32566 |
actcaaggttaatggaagtcaaatgaggaaacacaaatttaaccatctcatatgttccttcttccttggccacaatttctagaatcccacactgacttac |
32665 |
T |
|
| Q |
437 |
tcgaagactttgaagttg |
454 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
32666 |
ttgaagactttgaagttg |
32683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 151 - 454
Target Start/End: Complemental strand, 12137 - 11822
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||| ||||| |||| | |||| | | |||| || |
|
|
| T |
12137 |
ctactcttacctcttcaagcacaaaaagaggttgagatgttgagatattgagctcatcatttacggaattctctttttatctcaaaggctctgccttaaa |
12038 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||| ||| ||||||||| |||| || || ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | | |
|
|
| T |
12037 |
tagctgtatttttggacatccatagaagttgatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaattt |
11938 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||||||| | ||||| | |
|
|
| T |
11937 |
agaagtttaatgaatgtcaaatgaggaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaatcccacactgacttactt |
11838 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11837 |
gaagactttgaagttg |
11822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 151 - 454
Target Start/End: Complemental strand, 7572 - 7257
Alignment:
| Q |
151 |
ctactcttacctcttcaatcacaaaaagagcttgatatgttgagatattgtgctcaacatttttggaactttcttggtgtttcaat------------aa |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||| ||||| |||| | |||| || | |||| || |
|
|
| T |
7572 |
ctactcttacctcttcaagcacaaaaagaggttgagatgttgagatattgagctcatcatttacggaattctctttgtatctcaaaggctctgccttaaa |
7473 |
T |
|
| Q |
239 |
tagctctatatttggacattcatacaactttatctttttcaatgatttacattgaagagaatgaaccccaacaaagaatgccttaaatttggtcaagtat |
338 |
Q |
| |
|
||||||||| ||||||||| |||| || | ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| || || ||| | | |
|
|
| T |
7472 |
tagctctatttttggacatccatagaagtggatcgttttcaatgatttacagtgaagagaatgaaccccaacatagaatgcctcaagttcttgcaaattt |
7373 |
T |
|
| Q |
339 |
tcaagtttaatggaagtcaaatgaggaaacacaaatttaaccatctcatctgttccttcttccttgacaacaatttcatcaatcccacagttacttattc |
438 |
Q |
| |
|
| |||| ||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||| ||||| | ||||| | |
|
|
| T |
7372 |
tgaagtgtaatggatgttaaatgctgaaacacaaatttaaccatctcatttgttccttcttccttgccaacaatttcttgaataccacactgacttactt |
7273 |
T |
|
| Q |
439 |
gaagactttgaagttg |
454 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7272 |
taagactttgaagttg |
7257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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