View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_2 (Length: 710)
Name: NF16702_low_2
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 5497436 - 5497674
Alignment:
| Q |
19 |
tgggtgtgttaatccatcttgaaagtgtggctttctaaacctcttccctaaacnnnnnnntgttcttgtaccctacatgttggcagaatcagttgcacga |
118 |
Q |
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| T |
5497436 |
tgggtgtgttaatccatcttgaaagtgtggctttctaaacctcttccctaaacaaaaaaatgttcttgtaccctacatgttggcagaatcagttgcacaa |
5497535 |
T |
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| Q |
119 |
tagaatatatcaaagttggcattgctccttttacaccaaaattaagttcctattaaaggagttagtaatttcatatgcattgttatttactctcccatta |
218 |
Q |
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| T |
5497536 |
tagaatatatcaaagttggcattgctccttttacaccaaaattaagttcctattaaaggagttagtaatttcatatgcattgttatttactctcccatta |
5497635 |
T |
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| Q |
219 |
acatcaacttccatgataaacaatcattcaagaatacca |
257 |
Q |
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| T |
5497636 |
acatcaacttccatgataaacaatcattcaagaatacca |
5497674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 279 - 476
Target Start/End: Original strand, 5497727 - 5497924
Alignment:
| Q |
279 |
cataaatttatgttactaagtcaattcagaaggaaacaaagtaaaagggatggaaaaaattcccttttctagctataccattagttaaatcacataattt |
378 |
Q |
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| T |
5497727 |
cataaatttatgttgctaagtcaattcagaaggaaacaaagtaaaagggatggaaaaaattcccttttctagatataccattagttaaatcacataagtt |
5497826 |
T |
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| Q |
379 |
ttgtttttctaatttctgaccatgaatattggaattaatggttgttaagtcaagtaccatggttagttgaagagacaacatctagacagtgctctctc |
476 |
Q |
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| T |
5497827 |
ttgtttttctaatttctgaccatgaatattggaattaatggctgttaagtcatgtaccatggttagttgaagagacaatatctagacagtgctctctc |
5497924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 545 - 697
Target Start/End: Original strand, 5497993 - 5498146
Alignment:
| Q |
545 |
tgtatagtttcggttgcatattaaatattgaactttactagtactacacattgtataggctggtgaatgagctgtttagtataaacttgatcagaaaatg |
644 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5497993 |
tgtatagtttcggttgcatattaaatattgaactttactagtactacacattgtataggctggtgaatgagctgtttagtataaacttgatcagaaaatg |
5498092 |
T |
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| Q |
645 |
cattgtcaaatccaacggctggagacacttgac-ctaaccgctgcattcatttc |
697 |
Q |
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| T |
5498093 |
cattgtcaaatccaacggctggagacacttgactctaaccgctgcattcatttc |
5498146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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