View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_low_20 (Length: 463)
Name: NF16702_low_20
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Original strand, 29677891 - 29678326
Alignment:
| Q |
10 |
attattctttatagtagattttggatttgctatgcgattttctatataaatcattggtgatttgcttagacaatgaactgatcttgacgagaagaactgt |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29677891 |
attattctttatagtagatttaggatttgctatgcgattttctatataaatcattggtgatttgcttagacaatgaactgatcttgacgagaagaactgt |
29677990 |
T |
|
| Q |
110 |
cggtcaaaaatatgaagcaaagtaaacttcaaaccactaaagaagcgaaatttatatttgctttgttgggtacttggcctcgtgttactttgcgtgcaag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29677991 |
tggtcaaaaatatgaagcaaagtaaacttcaaaccactaaagaagcgaaatttatatttgctttgttgggtacttggcctcgtgttactttgcgtgcaag |
29678090 |
T |
|
| Q |
210 |
tcctgctaatccaattttaaaataaaagcataattgaagcactctcgctgtagttacttctgagtttccctttttctttgttgactggtacttttgaaac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29678091 |
tcctgctaatccaattttaaaataaaagcataattgaagcactcttgctgtagttacttctgagtttccc-ttttctttgttgactggtacttttgaaac |
29678189 |
T |
|
| Q |
310 |
atgcctactgcctgaagtttatttggacaactgtttatcagattgagattgataaacacttgttcaaacatgcatggtagtcattaagtttttcaaaata |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29678190 |
atgcctactgcctgaagtttatttggacaactgtttatcagattgagattgataaacacttgttcaaacatgcatggtagtcattaagtttttcaaaata |
29678289 |
T |
|
| Q |
410 |
tcagtgctagatgaatttatgtgcaaatacttaaatg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29678290 |
tcagtgctagatgaatttatgtgcaaatacttaaatg |
29678326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 29677730 - 29677846
Alignment:
| Q |
258 |
tgtagttacttctgagtttccctttttctttgttgactggtacttttgaaacatgcctactgcctgaagtttatttggacaactgtttatcagattgaga |
357 |
Q |
| |
|
|||||||| || ||||||||| || || || ||||| |||||||||||||| |||| ||||||||| ||| | |||||| ||| ||||| ||||||||| |
|
|
| T |
29677730 |
tgtagttaattttgagtttcctttgtt-ttagttgattggtacttttgaaatatgcttactgcctggagtctctttggaaaacactttattagattgaga |
29677828 |
T |
|
| Q |
358 |
ttgataaacacttgttca |
375 |
Q |
| |
|
||||||||| ||| |||| |
|
|
| T |
29677829 |
ttgataaacgcttcttca |
29677846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 15524634 - 15524578
Alignment:
| Q |
368 |
cttgttcaaacatgcatggtagtcattaagtttttcaaaatatcagtgctagatgaa |
424 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||| |
|
|
| T |
15524634 |
cttgttcaaacatgcatggtaatcattaagtttttcgaaatatcagaggtagatgaa |
15524578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University