View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_24 (Length: 445)
Name: NF16702_low_24
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 103 - 435
Target Start/End: Complemental strand, 23850212 - 23849880
Alignment:
| Q |
103 |
gtaaacaaaataggagtgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagtgttgttgctgaagaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23850212 |
gtaaacaaaataggagtgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagtgttgttgctgaagaa |
23850113 |
T |
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| Q |
203 |
gagttggaggcatgcttactttaaattcattggttttaaagaaaatgtaacaaaataggttaaagaaaatatgtacgggaagccctgttgatttgtgaaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23850112 |
gagttggaggcatgcttactttaaattcattggttttaaagaaaatgtaacaaaataggttaaagaaaatatgtacgggaagccctgttgatttgtgaaa |
23850013 |
T |
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| Q |
303 |
catgattgtctttatcttggtttttggattgctcctgtgaatatttcaactgaaaatgtatgtatatggtgtatttttattgtgtaatagttactttact |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23850012 |
catgattgtctttatcttggtttttggattgctcctgtgaatatttcaactgaaaatgtatgtatatggtgtatttttattgtgtaatagttactttact |
23849913 |
T |
|
| Q |
403 |
tctatgtgaaatgtagttttaaaatttcctttg |
435 |
Q |
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| T |
23849912 |
tctatgtgaaatgtagttttaaaatttcctttg |
23849880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 23749508 - 23749377
Alignment:
| Q |
103 |
gtaaacaaaataggagtgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagtgttgttgctgaagaa |
202 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||| || || ||||||| || ||| ||||||| |
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| T |
23749508 |
gtaaacaaaataggagtgagaaattgtggttttactttgtggtagcacttggatttgctactggcttttgggtttttattggagttttcttgttgaagaa |
23749409 |
T |
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| Q |
203 |
gagttggaggcatgcttactttaaattcattg |
234 |
Q |
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| T |
23749408 |
gggttggaggtttgcttacttcaaattcattg |
23749377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 22616889 - 22616782
Alignment:
| Q |
127 |
tgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagtgttgttgctgaagaagagttggaggcatgcttactttaa |
226 |
Q |
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|||||||||| |||||||||||| |||||||||| | |||||||||| || || ||||||| || ||| |||||||| || ||||| ||||||||||||| |
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| T |
22616889 |
tgtggttttattttgttgtagcaattggatttgctactggcttttgggtttttattggagttttcttgttgaagaagggtcggagggatgcttactttaa |
22616790 |
T |
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| Q |
227 |
attcattg |
234 |
Q |
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||||||| |
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| T |
22616789 |
tttcattg |
22616782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 20574455 - 20574570
Alignment:
| Q |
119 |
tgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagtgttgttgctgaagaagagttggaggcatgct |
218 |
Q |
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|||||| ||||||||||||||||| |||| |||||| ||||| | ||| |||||| | || ||||||| || ||| |||||||| || | ||||||||| |
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| T |
20574455 |
tgagaaattgtggttttactttgtggtagtacttgggtttgctactgggttttgggtctttattggagttttcttgttgaagaagggtcgaaggcatgct |
20574554 |
T |
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| Q |
219 |
tactttaaattcattg |
234 |
Q |
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|||||||||||||||| |
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| T |
20574555 |
tactttaaattcattg |
20574570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 23850297 - 23850257
Alignment:
| Q |
18 |
ggaaacaagtttctttgtggtgcaccattgccgaatcattg |
58 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
23850297 |
ggaaacaagtttctttgtggtgcaccattgccgaatcattg |
23850257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 23749596 - 23749556
Alignment:
| Q |
18 |
ggaaacaagtttctttgtggtgcaccattgccgaatcattg |
58 |
Q |
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|||||||| ||||||||||||||||||||| | |||||||| |
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| T |
23749596 |
ggaaacaaatttctttgtggtgcaccattgtctaatcattg |
23749556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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