View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_25 (Length: 443)
Name: NF16702_low_25
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 49325590 - 49325176
Alignment:
| Q |
16 |
atgaaagatcactttcacatcaactttatgaaggatcacttttgttttcaactccttggaattatattatcttttgtagtataagccgattgatagaaag |
115 |
Q |
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| T |
49325590 |
atgaaagatcactttcacatcaactttatgaaggatcatttttgttttcaattccttgaaattatattatcttttgtagtgtaagccgattgatagaaag |
49325491 |
T |
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| Q |
116 |
gtgattaacgaaaatagatgttagttttcagaggtgatattcctttttattctattcannnnnnnngacctaattctccaaattttctttcaaaaaatat |
215 |
Q |
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| T |
49325490 |
gtcattaacgaaaatagatgttagttttcagaggtgatattcctttttattctattcatttttttgg-cctaattctccaaattttctttcaaaaaatat |
49325392 |
T |
|
| Q |
216 |
ctcaaaattttaaatttgaatattgaacattttgaaaacatgattacttcnnnnnnnnnnnactgattatctgcaataataaatatattaaatgcgttta |
315 |
Q |
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| T |
49325391 |
ctccaaattttaaatttgaataatgaacattttgaaaacatgattacttctattttttt--actgattatctgcaataataaatatattaaatgcgttta |
49325294 |
T |
|
| Q |
316 |
tatgattcttcaatcaataagaaaattattgccataaatgaaaatttaatgttttagtcaagatgttagtgaagcactac-agttacaatgtctcaattc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
49325293 |
tatgattcttcaatcaataagaaaattattgccataaatgaaaatttaatgttttagtcaagatgttagtgaagcactacaaattacaatgtctcaattc |
49325194 |
T |
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| Q |
415 |
caaatttgaagtagtttt |
432 |
Q |
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| T |
49325193 |
caaatttgaagtagtttt |
49325176 |
T |
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