View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_27 (Length: 439)
Name: NF16702_low_27
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 49438965 - 49438553
Alignment:
| Q |
10 |
aagaatatggagagtattacgaggaaataacattgaatactcaatatgcccttgatagctttaacgagtttgtgcactccattctgctcaagctagattc |
109 |
Q |
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| T |
49438965 |
aagaatatggagagtattgcgaggaaataacattgaatactcaatatgcccttgatagctttaacgagtttgtgtactccattctgctcaagctagattc |
49438866 |
T |
|
| Q |
110 |
catcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgaccatgttgtacaccat |
209 |
Q |
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| T |
49438865 |
catcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgatcatgttgtacaccat |
49438766 |
T |
|
| Q |
210 |
ggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtgctcgacttgtttt |
309 |
Q |
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| T |
49438765 |
ggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtgctcgacttgtttt |
49438666 |
T |
|
| Q |
310 |
catttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgcttagaactttgttcatttctaaatgatcgagatttagtgttgct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438665 |
catttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgcttagaactttgttcatttctaaatgatcgagatttagtgttgct |
49438566 |
T |
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| Q |
410 |
tctggctggatgt |
422 |
Q |
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| T |
49438565 |
tctggctggatgt |
49438553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 67 - 422
Target Start/End: Complemental strand, 49435065 - 49434710
Alignment:
| Q |
67 |
gctttaacgagtttgtgcactccattctgctcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtgg |
166 |
Q |
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|||| |||||||||||| |||| || || ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| || || ||| |
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| T |
49435065 |
gcttcaacgagtttgtgtactctgttttgttcaagctagattccatcaagagtttctggctcaaggttggatataatggttctgatcttgcataccttgg |
49434966 |
T |
|
| Q |
167 |
ctttcccagtgtggtcaaatgggttgaccatgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgtt |
266 |
Q |
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| T |
49434965 |
ctttcctagcgtagttaaatggctcaaccatgttgtaaaacgcggtgttgagagaattcttctcactcttttctctggcgttgatatgaaattgcccgtt |
49434866 |
T |
|
| Q |
267 |
agcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgct |
366 |
Q |
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| T |
49434865 |
agcattttgaactgcaaaacccttgtggagctccacttgttttcatttaatgtgaaaggtttttcctctgttagacttccctccctcaaaatcctttatt |
49434766 |
T |
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| Q |
367 |
tagaactttgttcatttctaaatgatcgagatttagtgttgcttctggctggatgt |
422 |
Q |
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| T |
49434765 |
tagaactttgttcgtttctaaatgctagagatttagtattgcttttggctggatgt |
49434710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 49415223 - 49415269
Alignment:
| Q |
344 |
cccctccctcaaaatccttcgcttagaactttgttcatttctaaatg |
390 |
Q |
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||||||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
49415223 |
cccctccctcaaaatccttcgtttagaacattgtatatttctaaatg |
49415269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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