View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_low_3 (Length: 676)
Name: NF16702_low_3
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 662
Target Start/End: Complemental strand, 29081241 - 29080591
Alignment:
| Q |
17 |
aacactttcgttttggcatttccagtcgcatttgtgaacagggcttggaccatcatggcccaaaatacttgacagataaataacatttgaaggagctgca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29081241 |
aacactttcgttttggcatttccagtcgcatttgtgaacagggcttggaccatcatggcccaaaatacttgacagataaataacatttgaaggagctgca |
29081142 |
T |
|
| Q |
117 |
accatagattttccatatacctccattgaaacttcttgtatgatttcaatctaactccctctaaactttaaggccgtccctgaattttctgcagggccca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29081141 |
accatagattttccatatacctccattgaaacttcttgtatgatttcaatctaactccctctaaactttaaggccgtccctgaattttctgcagggccca |
29081042 |
T |
|
| Q |
217 |
cgacaacaacacagaattcagtcaaactcaacagaaactttcctataactaaccaatcttaatcttaaactaattttactttaacatccttctaacaata |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29081041 |
cgacaacaacacagaattaagtcaaactcaacagaaactttcctataactaaccaatcttaatcttaaactaattttactttaacatccttctaacaata |
29080942 |
T |
|
| Q |
317 |
aactaatttcatactaatccacaactaatcaatcccttccaaaaaaggcactaacaacagaaggatgtg--------nnnnnnnntatcttccataaatt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29080941 |
aactaatttcatactaatccacaactaatcaatcccttccaaaaaaggtactaacaacagaaggatgtgttaaatgtgaaaaaaatatcttccataaatt |
29080842 |
T |
|
| Q |
409 |
ggatcttgttttgttgatgcaacaacatatgaaaaagagaaaacctaacacatatttacaatcttttaccaaccatctctc-------nnnnnnnnnnnn |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29080841 |
ggatcttgttttgttgatgcaacaacatatg-aaaagggaaaacctaacacatatttaaaatcttttaccaaccatctctcaaaaaaaaaaaaaaaaaaa |
29080743 |
T |
|
| Q |
502 |
cttttatcaaccataacc-aatattgaaatttgcagataccaaaatgagagatatccaaatgaattatcaatcagaagnnnnnnnttataattgaaaaag |
600 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
29080742 |
cttttatcaaccataacctaatattgaaatttgcagat------atgagagatatccaaatgaatt----atcagaagaaaaaaattataattgaaaaag |
29080653 |
T |
|
| Q |
601 |
ggtatatatgtttgttatcattgtgtctctctcatgctattaagacaatccacactcaatct |
662 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
29080652 |
ggtatatatgtttgttatcattgtgtctctctcatgctaataagacaaaccgcactcaatct |
29080591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 42648894 - 42648774
Alignment:
| Q |
23 |
ttcgttttggcatttccagtcgcatttgtgaacagggcttggaccatcatggcccaaaatacttgacagataaataacatttgaaggagctgcaaccata |
122 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||| |||||| || ||||||||||||| ||||| |||||| |||||| ||||||||| ||| | |
|
|
| T |
42648894 |
ttcgttttggcacttccagtcgcatctgtgaccaggaattggactctctcggcccaaaatactcgacaggtaaatagcatttgcaggagctgctgccaca |
42648795 |
T |
|
| Q |
123 |
gattttccatatacctccatt |
143 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
42648794 |
gattttccatatacctccatt |
42648774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University