View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_30 (Length: 418)
Name: NF16702_low_30
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 2 - 410
Target Start/End: Complemental strand, 43362535 - 43362115
Alignment:
| Q |
2 |
catgaccatcaaggttcacagtagaagtatatagaagtactacttaaataggtgttgaataataacttcacatgtaggagaggcccttggacataaggat |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43362535 |
catgaccatcaaggttcacagtagaagtatatagaagtactacttaaataggtgttgaataataacttcacatgtaggagaggcccttggacataaggac |
43362436 |
T |
|
| Q |
102 |
aattctctttctagtttgagttcgtcactacaatagatttccatggttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcaccttc |
201 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43362435 |
aattctctttctagtttgagttcgtcactgcaatagatttccatggttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcaccgtc |
43362336 |
T |
|
| Q |
202 |
ttgccctaaaagttcacaagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaa------------tctactatgcaactacct |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
43362335 |
ttgccctaaaagttcacaagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaatctttgacattttctactatccaattacct |
43362236 |
T |
|
| Q |
290 |
ttgcccatcttatccgagaatgatgagaatagatctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcacgtgcaccca |
389 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43362235 |
ttgtccatcttatgtgagaatgatgagaatagatctcaaccattaaataaaaaatgcacagttgagattaaaacatcacattaaaagtcacgtgcaccca |
43362136 |
T |
|
| Q |
390 |
attcccacccttgttcatctc |
410 |
Q |
| |
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|||| ||||||| |||||||| |
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| T |
43362135 |
attctcacccttattcatctc |
43362115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 49426405 - 49426545
Alignment:
| Q |
65 |
aacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gcaaaactcttgca |
163 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||| |||| ||||| | | ||||||||| | || ||||| ||||| ||||||| |||||||||||||| |
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| T |
49426405 |
aacttcacatataggggaggcccttgggcataataataactctctatatgttttgagttctttaccacaattgattttcatggtttgcaaaactcttgca |
49426504 |
T |
|
| Q |
164 |
ttcttcacaatatatattgccaataaaagctcaccttcttg |
204 |
Q |
| |
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||||| | ||||| | ||||||||| |||||||| |||||| |
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| T |
49426505 |
ttctttagaatatgttttgccaatagaagctcactttcttg |
49426545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 17641093 - 17641275
Alignment:
| Q |
100 |
ataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gcaaaactcttgcattcttcacaatatatattgccaataaaagctcacc |
198 |
Q |
| |
|
|||| |||||||||| |||||| || ||||| |||| |||| ||||||| |||||||| |||||||||||| ||| | | ||||||||| |||||| || |
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|
| T |
17641093 |
ataactctctttctattttgaggtcttcactgcaatgtattttcatggtttgcaaaacttttgcattcttcagaatgtttcttgccaatagaagctcgcc |
17641192 |
T |
|
| Q |
199 |
ttcttgcccta-aaagttca--------caagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaat |
272 |
Q |
| |
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|||||| |||| ||||| | ||| ||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||| |
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|
| T |
17641193 |
ttcttggcctatgaagtttagaactttgcaaattttaaggtgtaatgaaaaacattgcggaacaaatattgggtccacccaat |
17641275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 49437751 - 49437871
Alignment:
| Q |
63 |
ataacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttcca-tggttgcaaaactcttg |
161 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||||||||| | || ||| | | | || | ||||| || || |||||||||||||| |
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|
| T |
49437751 |
ataacttcacatataggagagacccttgggcataaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaactcttg |
49437850 |
T |
|
| Q |
162 |
cattcttcacaatatatattg |
182 |
Q |
| |
|
||||||||| ||||||||||| |
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|
| T |
49437851 |
cattcttcagaatatatattg |
49437871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 263
Target Start/End: Complemental strand, 49416182 - 49415963
Alignment:
| Q |
59 |
aataataacttcacatgtaggagaggccc-----ttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggtt-gca |
152 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| || ||| |||||||||| | | |||| | || || || |||| |||| ||||||| ||| |
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|
| T |
49416182 |
aataataatttcacatgtaggagaggcccggcccttgggcacaagagtaattctcttccgattttggggtcatcgctgcaatgtattttcatggtttgca |
49416083 |
T |
|
| Q |
153 |
aaactcttgcattcttcacaatatatattgccaataaaagctcaccttcttgccctaa-aagttca--------caagttttaagttgtgatggaaagca |
243 |
Q |
| |
|
||||||| |||||||||| ||| ||| ||||||||| |||||| ||||||| ||||| ||||||| ||||||||||||||| ||| || | |
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| T |
49416082 |
aaactctagcattcttcaaaatgtatcttgccaatagaagctcgccttcttcgcctaagaagttcagaagtttgcaagttttaagttgtaatgaaagact |
49415983 |
T |
|
| Q |
244 |
ttgtggaacaaatattgggt |
263 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
49415982 |
ttgtggaacaaatattgggt |
49415963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 204
Target Start/End: Original strand, 49432642 - 49432786
Alignment:
| Q |
61 |
taataacttcacatgtaggagaggcccttggacataaggataattctctttctagtttgagttcgtcactacaatagatttccatggttg-caaaactct |
159 |
Q |
| |
|
|||||||||||||| ||||||| ||||| | |||||| ||| |||||| || || || || | || ||||| ||||| ||||||| ||||||||| |
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| T |
49432642 |
taataacttcacatataggagaagccctatggcataagagtaactctcttaatatttcgaagtctttaccacaatggattttcatggtttacaaaactct |
49432741 |
T |
|
| Q |
160 |
tgcattcttcacaatatatattgccaataaaagctcaccttcttg |
204 |
Q |
| |
|
|| |||||| | ||||||| ||||||||| |||||||| |||||| |
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|
| T |
49432742 |
tgaattctttagaatatatcttgccaatagaagctcactttcttg |
49432786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 49445344 - 49445394
Alignment:
| Q |
148 |
ttgcaaaactcttgcattcttcacaatatatattgccaataaaagctcacc |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| | ||||||||| |
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|
| T |
49445344 |
ttgcaaaactcttgcattcttcaaaatatattttgccatcagaagctcacc |
49445394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 296 - 401
Target Start/End: Original strand, 48718284 - 48718389
Alignment:
| Q |
296 |
atcttatccgagaatgatgagaatagatctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcacgtgcacccaattccc |
395 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
48718284 |
atcttatgtgagaatgatgagaataaatcttaaccattaaatgaaaaatgcacggttgagattaaaacatcacattaaaagtcatttgcacccaattctc |
48718383 |
T |
|
| Q |
396 |
accctt |
401 |
Q |
| |
|
|||||| |
|
|
| T |
48718384 |
accctt |
48718389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 48718958 - 48718898
Alignment:
| Q |
323 |
tctcaaccattaaataaaaaat---gcacagtggagattaaaacatcacattaaaagtcac |
380 |
Q |
| |
|
|||||| ||||||||||||||| | || || |||||||||||||||||||||||||||| |
|
|
| T |
48718958 |
tctcaagcattaaataaaaaataatgtacggttgagattaaaacatcacattaaaagtcac |
48718898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 38367283 - 38367225
Alignment:
| Q |
322 |
atctcaaccattaaataaaaaatgcacagtggagattaaaacatcacattaaaagtcac |
380 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
38367283 |
atcttaaccattaaataaaaaatgcatggttaagattaaaacatcacattaaaactcac |
38367225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 38366625 - 38366670
Alignment:
| Q |
325 |
tcaaccattaaataaaaaatgcacagtggagattaaaacatcacat |
370 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
38366625 |
tcaaccatcaaataaaaaatgcatggttgagattaaaacatcacat |
38366670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 1024755 - 1024808
Alignment:
| Q |
219 |
aagttttaagttgtgatggaaagcattgtggaacaaatattgggtccacccaat |
272 |
Q |
| |
|
||||| |||| |||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
1024755 |
aagttctaaggtgtgataaaaagcattgtggaacaaattctgggtccacccaat |
1024808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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