View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_31 (Length: 412)
Name: NF16702_low_31
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 21 - 401
Target Start/End: Original strand, 41989958 - 41990334
Alignment:
| Q |
21 |
tgcaatctatacactctttcgctctcttttttaaatacttatgactatgttattgctcattagttgaaatttatactgttgtcacaatttaaaaaatgga |
120 |
Q |
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| T |
41989958 |
tgcaaactatacactctttcactctcttttttaaatacttatgactatgttattgctcattagttgaaatttatactgttgtcacaatttaaaaaatgga |
41990057 |
T |
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| Q |
121 |
tagtgtataaatcaatggaactaaaatagaatttagctagctactactaactaatagaatgaatagtttatatggttgattataccgcaggcaatggtgt |
220 |
Q |
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| T |
41990058 |
tagtgtataaatcaatggaactaaaatagaatt----tagctactactaactaatagaatgaatagtttatatggttgattataccgcaggcaatggtgt |
41990153 |
T |
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| Q |
221 |
tgtgaatcacgaaaacttcacgtgcaattctgacttacttgtttactacaaccgaccaannnnnnnatgaatttcaaaatatactaccaaacgttggacc |
320 |
Q |
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| T |
41990154 |
tgtgaatcacgaaaacttcacgtgcaattctgacttacttgtttactacaaccgaccaatttttttatgaatttcaaaatatactaccaaacgttggacc |
41990253 |
T |
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| Q |
321 |
actttgaatatagagcatttcagacattaatgttactgttaccagctctgtctctaatgtttttactccccacactttcat |
401 |
Q |
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| T |
41990254 |
actttgaatatagagcatttcagacattaatgttattgttaccagctctgtctctaatgtttttactccccacactttcat |
41990334 |
T |
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