View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_33 (Length: 399)
Name: NF16702_low_33
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 39582358 - 39582732
Alignment:
| Q |
19 |
tatagacaccatttgcc-tctttgcttcatagaagaagaaagtcgggaccatctattcatgaggtgcaagttagcgcaacaaacctggttcagctccatt |
117 |
Q |
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| T |
39582358 |
tatagacaccatttgccctctttgcttcatagaagaagaaagtcgggaccatctattcatgaggtgcaagttagcgcaacaaacctggttcagctccatt |
39582457 |
T |
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| Q |
118 |
ttgggaatccatgtgccagctcacttatcgttgaaagattggatgattgagtggttatccaaaaaagaccacttagcctctcaattttttgatataactg |
217 |
Q |
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| T |
39582458 |
ttgggaatccatgtgccagctcacttatcgttgaaagattggatgattgagtggttatccaaaaaagaccacttagcctctcaattttttgatataactg |
39582557 |
T |
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| Q |
218 |
tggaaaatttggcagggtaaaaatcaaatggtgtttcnnnnnnngcattttgactctattcaaatagccatggtagcttctgatttcactgatgaattta |
317 |
Q |
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| T |
39582558 |
tcgaaaatttggcagggtaaaaatcaaatggtgtttcaaaaaaagcattttgactctattcaaatagccatggtagcttctgatttcactgatgaattta |
39582657 |
T |
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| Q |
318 |
actatgctaatagatttgaaggggcagcggaacctgctgcacaaactgttgagaaatggtgtcctccaccctttg |
392 |
Q |
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| T |
39582658 |
actatgctaatagatttgaaggggcagcggaacctgctgcacaaactgttgagaaatggtgtcctccaccctttg |
39582732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 327
Target Start/End: Original strand, 53330398 - 53330673
Alignment:
| Q |
48 |
agaagaagaaagtcgggaccatctattcatgaggtgcaagttagcgcaacaaacctggttcagctccattttgggaatccatgtgccagctcacttatcg |
147 |
Q |
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| T |
53330398 |
agaagaagaaaatcgggaccatttatt--tgaggtacaaattcacgcaacaaacttggttcagctccaaattgggtatccatgtccctgcacactcattg |
53330495 |
T |
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| Q |
148 |
ttgaaagattggatgattgagtggttatccaaaaaagaccacttagcctctcaattttttgatataactgtggaaaatttggcagggtaaaaatcaaatg |
247 |
Q |
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|||| || |||| | || ||||||||||||||||| || ||||||||||||| ||||| ||| || |||||||||||||| ||| |||||||||| |
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| T |
53330496 |
ctgaaggaaaggattttgga-tggttatccaaaaaagatcatttagcctctcaatattttggtatggctctggaaaatttggca-agtagaaatcaaatg |
53330593 |
T |
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| Q |
248 |
gtgtttcnnnnnnngcattttgactctattcaaatagccatggtagcttctgatttcactgatgaatttaactatgctaa |
327 |
Q |
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| T |
53330594 |
gtgtttcaaaacaagcattttgaccctatacaaatagccaatgcagctgctgatttcactgttgagtttaatgatgctaa |
53330673 |
T |
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