View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_low_34 (Length: 379)

Name: NF16702_low_34
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_low_34
NF16702_low_34
[»] chr2 (3 HSPs)
chr2 (1-170)||(30837546-30837717)
chr2 (209-364)||(30837360-30837507)
chr2 (95-170)||(30839446-30839519)
[»] chr5 (1 HSPs)
chr5 (22-59)||(16100766-16100803)
[»] chr4 (2 HSPs)
chr4 (22-59)||(46844750-46844787)
chr4 (25-57)||(50971916-50971948)
[»] chr7 (1 HSPs)
chr7 (23-59)||(29715046-29715082)
[»] chr1 (1 HSPs)
chr1 (25-57)||(3781804-3781836)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 30837717 - 30837546
Alignment:
Q  1 ccagctcgtaaaatgtgttcaacgcgagcaaaatatgttggaagaagagcagaattcaatatactcagtgcacaaatttaaaagttagtgttatcatatg 100  Q
    |||||| |||||||||||| |||||||||||||| |||||||||| || || ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30837717 ccagctggtaaaatgtgttgaacgcgagcaaaatgtgttggaagatgaacaaaattcaatatactaagtgcacaaatttaaaagttagtgttatcatatg 30837618  T
Q  101 gctttcattagtgtat--atgtccacaataaaataagagagttgtatcactaaagatgattaactctcatcc 170  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30837617 gctttcattagtgtataaatgtccacaataaaataagagagttgtatcactaaagatgattaactctcatcc 30837546  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 364
Target Start/End: Complemental strand, 30837507 - 30837360
Alignment:
Q  209 cccgtgtttgagaattatccatgtaaatgttaaatttatccatgtnnnnnnntgatattttctttgaaaattacatgaaataaacattttaacccctcaa 308  Q
    |||||||||||||||||||||||||| |||||||| ||   ||         ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30837507 cccgtgtttgagaattatccatgtaagtgttaaatgtaaaaat--------atgatattttctttgaaaattagatgaaataaacattttaacccctcaa 30837416  T
Q  309 cctacatactaccgcagataacaaactacacaactttcatacttaaacgccccatc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30837415 cctacatactaccgcagataacaaactacacaactttcatacttaaacgccccatc 30837360  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 30839519 - 30839446
Alignment:
Q  95 catatggctttcattagtgtatatgtccacaataaaataagagagttgtatcactaaagatgattaactctcatcc 170  Q
    |||||||||||| ||||||||   ||||||||||||||||||||||||||| || |||||||||||| | ||||||    
T  30839519 catatggctttcgttagtgtac--gtccacaataaaataagagagttgtatgaccaaagatgattaagtttcatcc 30839446  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 16100803 - 16100766
Alignment:
Q  22 acgcgagcaaaatatgttggaagaagagcagaattcaa 59  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  16100803 acgcgagcaaaatgtgttggaagaagagcagaattcaa 16100766  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 46844750 - 46844787
Alignment:
Q  22 acgcgagcaaaatatgttggaagaagagcagaattcaa 59  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  46844750 acgcgagcaaaatatattgggagaagagcagaattcaa 46844787  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 50971948 - 50971916
Alignment:
Q  25 cgagcaaaatatgttggaagaagagcagaattc 57  Q
    ||||||||||||| |||||||||||||||||||    
T  50971948 cgagcaaaatatgctggaagaagagcagaattc 50971916  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 29715046 - 29715082
Alignment:
Q  23 cgcgagcaaaatatgttggaagaagagcagaattcaa 59  Q
    |||||||||||  ||||||||||||||||||||||||    
T  29715046 cgcgagcaaaacttgttggaagaagagcagaattcaa 29715082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 3781836 - 3781804
Alignment:
Q  25 cgagcaaaatatgttggaagaagagcagaattc 57  Q
    |||||||||| ||||||||||||||||||||||    
T  3781836 cgagcaaaatgtgttggaagaagagcagaattc 3781804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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