View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_39 (Length: 348)
Name: NF16702_low_39
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_39 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 9405 - 9629
Alignment:
| Q |
16 |
aagttgtcggaattattcgtaataagatattggctacaatggtaaaggtcttatcaataaaatttccatttatccgagatctagtcataggtagcaatcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9405 |
aagttgtcggaattattcgtaataagatattggctacaatggtaaaggtcttatcaataaaatttccatttatccgagatctagtcataggtagcaatcc |
9504 |
T |
|
| Q |
116 |
attctaaaatttcattttttatcgcgtgataaaagaat-ccccnnnnnnnggaattgtacaatacagtacgaaataacgtaaaaatggacttattaatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9505 |
attctaaaatttcattttttatcgcgtgataaaagaatcccccaaacaaaggaattgtacaatacagtacgaaataacgtaaaaatggacttattaatca |
9604 |
T |
|
| Q |
215 |
aataattttatcctacggcaggcct |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
9605 |
aataattttatcctacggcaggcct |
9629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 18180404 - 18180628
Alignment:
| Q |
16 |
aagttgtcggaattattcgtaataagatattggctacaatggtaaaggtcttatcaataaaatttccatttatccgagatctagtcataggtagcaatcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180404 |
aagttgtcggaattattcgtaataagatattggctacaatggtaaaggtcttatcaataaaatttccatttatccgagatctagtcataggtagcaatcc |
18180503 |
T |
|
| Q |
116 |
attctaaaatttcattttttatcgcgtgataaaagaat-ccccnnnnnnnggaattgtacaatacagtacgaaataacgtaaaaatggacttattaatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180504 |
attctaaaatttcattttttatcgcgtgataaaagaatcccccaaacaaaggaattgtacaatacagtacgaaataacgtaaaaatggacttattaatca |
18180603 |
T |
|
| Q |
215 |
aataattttatcctacggcaggcct |
239 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
18180604 |
aataattttatcctacggcaggcct |
18180628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 43278129 - 43278339
Alignment:
| Q |
16 |
aagttgtcggaattattcgtaataagatattggctacaatggtaaaggtcttatcaataaaatttccatttatccgagatctagtcataggtagcaatcc |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43278129 |
aagttgtcggaattattcgaaataagatattggctacaacggcaaaggtcttatcaataaaatttccatttatccgagatctagtcataggtagcaatcc |
43278228 |
T |
|
| Q |
116 |
attctaaaatttcattttttatcgcgtgataaaagaatccccnnnnnnnggaattgtacaatacagtacgaaataacgtaaaaatggacttattaatcaa |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43278229 |
attctaaaatttcattttttatcgcgtgataaaagaatccccaaacaaagaaattgtacaatattgtacgaaataacgtaaaaatggacttattaatcaa |
43278328 |
T |
|
| Q |
216 |
ataattttatc |
226 |
Q |
| |
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||||||||||| |
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| T |
43278329 |
ataattttatc |
43278339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 37189147 - 37189285
Alignment:
| Q |
102 |
ataggtagcaatccattctaaaatttcattttttatcgcgtgataaaagaat-ccccnnnnnnnggaattgtacaatacagtacgaaataacgtaaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
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| T |
37189147 |
ataggtagcaatccattctaaaatttcattttttatcgcgtgataaaagaattccccaaacaaaggaattgtacaatacaatacgaaataacgtaaaaat |
37189246 |
T |
|
| Q |
201 |
ggacttattaatcaaataattttatcctacggcaggcct |
239 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
37189247 |
ggacttattaatcaaataattttatcctacggaaggcct |
37189285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 13477295 - 13477430
Alignment:
| Q |
105 |
ggtagcaatccattctaaaatttcattttttatcgcgtgataaaagaatccccnnnnnnn-ggaattgtacaatacagtacgaaataacgtaaaaatgga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13477295 |
ggtagcaatccattctaaaatttcattttttatcgcgtgataaaagaatcccccaaacaaaggaattgtacaatacagtacgaaataacgtaaaaatgga |
13477394 |
T |
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| Q |
204 |
cttattaatcaaataattttatcctacggcaggcct |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13477395 |
cttattaatcaaataattttatcctacggcaggcct |
13477430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 243 - 342
Target Start/End: Complemental strand, 33159693 - 33159594
Alignment:
| Q |
243 |
ttatgtataacactttcttgtttttcgtgtaaattacacattagagaatccatttttgtagttcagagagtaagattatgtcaacaaatatattcttgga |
342 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| ||| ||||| |
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| T |
33159693 |
ttatatataacactttcttgtttttcgtgtaaattacacattagagaatccattctccaagctcagagagtaagattatgtcaacaaatacatttttgga |
33159594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 20223812 - 20223725
Alignment:
| Q |
59 |
aaaggtcttatcaataaaatttccatttatccgagatctagtcataggt---agcaatccattctaaaatttcattttttatcgcgtg |
143 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20223812 |
aaaggtcttatcaataaaattttcatttatctgagatctagtcataggtagcagcaatccattctaaaatttcattttttatcgcgtg |
20223725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 20223891 - 20223833
Alignment:
| Q |
16 |
aagttgtcggaattattcgtaataagatattggctacaatggtaaaggtcttatcaata |
74 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
20223891 |
aagttgtcggaattattcggaataagatattggctacaatagtaaaggtcttatcaata |
20223833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 244127 - 244215
Alignment:
| Q |
16 |
aagttgtcggaattattcgtaataagatattggctacaatggtaaaggtcttatcaataaaatttccatttatccgagatctagtcata |
104 |
Q |
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||||||||||||||||||| ||||| |||||||||| ||| | |||||||||||||| ||||||||||||| || ||||||| |||| |
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| T |
244127 |
aagttgtcggaattattcgcaataaaatattggctataattgagaaggtcttatcaatgaaatttccatttacacgggatctaggcata |
244215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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