View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_low_4 (Length: 660)

Name: NF16702_low_4
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_low_4
NF16702_low_4
[»] chr3 (11 HSPs)
chr3 (15-659)||(224944-225608)
chr3 (157-659)||(210462-210953)
chr3 (442-660)||(222009-222227)
chr3 (442-659)||(217065-217282)
chr3 (442-659)||(197187-197404)
chr3 (281-350)||(197599-197668)
chr3 (281-350)||(204300-204369)
chr3 (442-659)||(204789-205006)
chr3 (442-605)||(226240-226403)
chr3 (41-121)||(211016-211096)
chr3 (304-346)||(223560-223602)
[»] chr5 (3 HSPs)
chr5 (444-659)||(29838340-29838555)
chr5 (155-248)||(34122143-34122236)
chr5 (297-342)||(29839309-29839354)
[»] chr4 (2 HSPs)
chr4 (281-350)||(6904121-6904190)
chr4 (442-659)||(6903487-6903704)


Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 15 - 659
Target Start/End: Complemental strand, 225608 - 224944
Alignment:
Q  15 agtttggttggttgttaggnnnnnnnagttactaatagctatcatcaatgagcaatatggaccaagtgttgttagtaacagaagcagtgcagtaccagtg 114  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225608 agtttggttggttgttaggtttttttagttactaatagctatcatcaatgagcaatatggaccaagtgttgttagtaacagaagcagtgcagtaccagtg 225509  T
Q  115 aataaaat------------------ctcattttctaatttcaaatatcctaagtgtgttttctttcgcaacataaaccgctcacacgtcacgccacata 196  Q
    ||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225508 aataaaataatttgcattcattctttctcattttctaatttcaaatatcctaagtgtgttttctttcgcaacataaaccgctcacacgtcacgccacata 225409  T
Q  197 cgagttcattattctttgtttataatgtgaattggtgatctgaatgtgtgaagcattgacacttatcacttattgaattgcaggcagaaaaagaagttag 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |  ||| ||||    
T  225408 cgagttcattattctttgtttataatgtgaattggtgatctgaatgtgtgaagtgttgacacttatcacttattgaattgcaggcagagatggaaattag 225309  T
Q  297 ggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaagaaattgtaaaattcactannnnnnnnnnnnnnnnnnnn--ttgtaat 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      || ||||    
T  225308 ggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaagaaattgtaaaattcactactctctctctctctctctctctttctaat 225209  T
Q  395 agtataactgatgagttgttttataatcaattaaacaagtgataataactgcagagaattcctgaagtctttataacaatatatgggagcgaactcaaga 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225208 agtataactgatgagttgttttataatcaattaaacaagtgataataactgcagagaattcctgaagtctttataacaatatatgggagcgaactcaaga 225109  T
Q  495 atgttgctacaattactgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgc 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  225108 atgttgctacaattactgtaccggatggtcttacttggaaattggaattgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacaatttgc 225009  T
Q  595 agaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaaagttta 659  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  225008 agaatactattctttaagatatggttgcttcatgtctttcaaatatgaagggaattcaaagttta 224944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 157 - 659
Target Start/End: Complemental strand, 210953 - 210462
Alignment:
Q  157 ttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataatgtgaattggtgatctgaatgtgtgaagcattgac 256  Q
    ||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| || ||    
T  210953 ttcttccgcaacatgaaccactcacacgtcacgccacatacaagttcattattctttgtttgtaatgcgaattggtgttctgaatgtgagaagcgttaac 210854  T
Q  257 acttatcacttattgaattgcaggcagaaaaagaagttagggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaagaaattgt 356  Q
    ||||||||||||||||||||||||| || || |||||||||||||||| ||||||||| || || |||||||||||||||||| ||||||||||||||||    
T  210853 acttatcacttattgaattgcaggcggagaaggaagttagggaatccatacattttaaaaaagctatacttccctcacccatttatgacaaagaaattgt 210754  T
Q  357 aaaattcactannnnnnnnnnnnnnnnnnnnttgtaatagtataactgatgagttgttttataatcaattaaacaagtgataataactgcagagaattcc 456  Q
    ||||||| ||                     || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  210753 aaaattctct--------------tctctctttctaatagtataactgatgagttattttataatcaattaaacaagtgatgataactgcagagaattcc 210668  T
Q  457 tgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaattgaagaaacgtggg 556  Q
     |||  |||||||||||| | |||||  |||||| |||||||||||||| ||||||| || ||||||  |  |||| || |||| ||||||||| ||||     
T  210667 agaaaactttataacaatgtttgggaatgaactcgagaatgttgctacagttactgttcccgatggttgtgattgggaaatggacttgaagaaatgtggc 210568  T
Q  557 gaggatgtttacttttgcaaca---aatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaagggaattcaa 653  Q
    ||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  210567 gaggatgtttacttttgcaacaaggaatggcaacagtttgcagaatactattctttaagatacggttgcttcctgtctttcagatacgaagggaattcaa 210468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 442 - 660
Target Start/End: Complemental strand, 222227 - 222009
Alignment:
Q  442 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 541  Q
    ||||||||||||||| || |  ||||||| || || |||||  ||||||||||||||||||||||||||||| || |||||   |  |||| || |||||    
T  222227 actgcagagaattccagatggatttataaaaagatttgggaatgaactcaagaatgttgctacaattactgttcccgatggctgtgattgggaaatggaa 222128  T
Q  542 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 641  Q
     |||||||| | ||  | || ||||||||||||||||||||| ||||||||||||||||||||||| || | || |||| |||| ||  |||||||||||    
T  222127 ctgaagaaatgcggcaacgacgtttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttccttcttgcgtttcaaatatg 222028  T
Q  642 aagggaattcaaagtttaa 660  Q
    ||||| |||||||||||||    
T  222027 aaggggattcaaagtttaa 222009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 442 - 659
Target Start/End: Complemental strand, 217282 - 217065
Alignment:
Q  442 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 541  Q
    |||| |||||||||| || |  ||||||| || || |||||  ||||||||||||||||||||||||||||| || ||||||  |  |||| || || ||    
T  217282 actgtagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaattactgttcccgatggttgtgattgggaaatgaaa 217183  T
Q  542 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 641  Q
     |||||||| | ||  | || ||||||||||||||||||||| ||||||||||||||||||||||| || | || |||| |||| ||| |||||||||||    
T  217182 ctgaagaaatgcggcaatgacgtttacttttgcaacaaatggcaacagtttgcagaatactattctatagggtatggttccttcctgtgtttcaaatatg 217083  T
Q  642 aagggaattcaaagttta 659  Q
    ||||| ||||||||||||    
T  217082 aaggggattcaaagttta 217065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 442 - 659
Target Start/End: Complemental strand, 197404 - 197187
Alignment:
Q  442 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 541  Q
    |||||||||||||||||||| |||||||||||| | |||||  |||||| |||| ||||||||| |||| || || ||||||| |  ||||||| ||  |    
T  197404 actgcagagaattcctgaagactttataacaatgtttgggaatgaactcgagaaagttgctacagttacagttcccgatggtcgtgattggaaaatgaga 197305  T
Q  542 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 641  Q
    ||||||||||| ||  | ||  ||| ||||| |||| ||||| || |||| ||| |||||||||| ||| | || ||||||| | | ||||||||||| |    
T  197304 ttgaagaaacgcggcaatgacattttcttttccaacgaatgggaagagttcgcaaaatactattcattagggtatggttgctacctatctttcaaatacg 197205  T
Q  642 aagggaattcaaagttta 659  Q
    ||||||||||||||||||    
T  197204 aagggaattcaaagttta 197187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 197668 - 197599
Alignment:
Q  281 cagaaaaagaagttagggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaaga 350  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  197668 cagaaaaggaagtaagggaatccaaacatttcaagaaggccatacttccctcgcccattcatgacaaaga 197599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 204300 - 204369
Alignment:
Q  281 cagaaaaagaagttagggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaaga 350  Q
    ||||||||||||| ||||||||| |||||||||||| || |||||||||||| |||||||||||||||||    
T  204300 cagaaaaagaagtaagggaatccgaacattttaagatggacatacttccctcgcccattcatgacaaaga 204369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 442 - 659
Target Start/End: Original strand, 204789 - 205006
Alignment:
Q  442 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 541  Q
    ||||||||||||| | || |  |||||||||| || |||||  ||||||||||||||||||||| ||||||   | ||||||| |  ||||| | ||  |    
T  204789 actgcagagaatttcagatgagtttataacaagatttgggatagaactcaagaatgttgctacagttactgctactgatggtcgtgattggagaatgaga 204888  T
Q  542 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 641  Q
    ||||||||||  ||  | ||  ||| ||||| |||| ||||| || |||||||| |||||||||| ||| |||  ||||||| | | ||||||||||| |    
T  204889 ttgaagaaacacggcaatgacattttcttttacaacgaatggcaagagtttgcaaaatactattcgttaggatgtggttgctacctatctttcaaatacg 204988  T
Q  642 aagggaattcaaagttta 659  Q
    |||| |||||||||||||    
T  204989 aaggaaattcaaagttta 205006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 442 - 605
Target Start/End: Complemental strand, 226403 - 226240
Alignment:
Q  442 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 541  Q
    ||||||||||||||| || |  |||||||||| || |||||  |||||| | ||||||||||| |||||||| || ||||||| |   |||||  |||||    
T  226403 actgcagagaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctaccattactgttcccgatggtcgtgagtggaatatggaa 226304  T
Q  542 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactatt 605  Q
     | |||||| |||| |   |  ||| |||||||||||| ||| |||||||||||||||||||||    
T  226303 ctaaagaaatgtggcggccaaattttcttttgcaacaattggcaacagtttgcagaatactatt 226240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 211096 - 211016
Alignment:
Q  41 agttactaatagctatcatcaatgagcaatatggaccaagtgttgttagtaacagaagcagtgcagtaccagtgaataaaa 121  Q
    ||||||||||||| | ||||||||| ||| | || ||||||||  ||||||||| |||| ||||| || ||||||||||||    
T  211096 agttactaatagcgaccatcaatgaacaacacgggccaagtgtatttagtaacaaaagccgtgcattagcagtgaataaaa 211016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 223602 - 223560
Alignment:
Q  304 aaacattttaagaaggccatacttccctcacccattcatgaca 346  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||    
T  223602 aaacattttatgaaagccatccttccctcacccattcatgaca 223560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 444 - 659
Target Start/End: Complemental strand, 29838555 - 29838340
Alignment:
Q  444 tgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaatt 543  Q
    ||||||||||||| || |  |||||||||| || ||| |  |||||||| |||||||||||||||||||| || ||||||| |   |||||| ||||| |    
T  29838555 tgcagagaattccagatgaatttataacaagatttggaaatgaactcaataatgttgctacaattactgttccagatggtcgtgtatggaaaatggaact 29838456  T
Q  544 gaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatgaa 643  Q
    |||||||||||| ||| |||||| |||||||||||||||| || |||||| |||||| |||||| || |||| ||||||||||| |||||||||||||||    
T  29838455 gaagaaacgtggcgagaatgttttcttttgcaacaaatggcaagagtttgtagaatattattctataggatatggttgcttcatttctttcaaatatgaa 29838356  T
Q  644 gggaattcaaagttta 659  Q
    ||||||||||||||||    
T  29838355 gggaattcaaagttta 29838340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 34122143 - 34122236
Alignment:
Q  155 ttttctttcgcaacataaaccgctcacacgtcacgccacatacgagttcattattctttgtttataatgtgaattggtgatctgaatgtgtgaa 248  Q
    ||||||||| |||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  34122143 ttttctttcacaacatgaacctctcacacgtcatgccacatacaagttcattattctttgtttataacatgaatcagtgatctgaatgtgtgaa 34122236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 29839354 - 29839309
Alignment:
Q  297 ggaatccaaacattttaagaaggccatacttccctcacccattcat 342  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||    
T  29839354 ggaatcaaaacattttatgaaagccatacttccctcacccattcat 29839309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 6904190 - 6904121
Alignment:
Q  281 cagaaaaagaagttagggaatccaaacattttaagaaggccatacttccctcacccattcatgacaaaga 350  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  6904190 cagaaaaagaagtaagggaatccgaacattttaagatggccatacttccctcgcccattcatgacaaaga 6904121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 659
Target Start/End: Complemental strand, 6903704 - 6903487
Alignment:
Q  442 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaattactgtaccggatggtcttacttggaaattggaa 541  Q
    ||||||||||||| | || |  |||||||||| || |||||  ||||||||||||||||||||| ||||||  || ||||||| |  ||||| | ||  |    
T  6903704 actgcagagaatttcagatgagtttataacaagatttgggatagaactcaagaatgttgctacagttactgctcctgatggtcgtgattggagaatgaga 6903605  T
Q  542 ttgaagaaacgtggggaggatgtttacttttgcaacaaatggaaacagtttgcagaatactattctttaagatacggttgcttcatgtctttcaaatatg 641  Q
    ||||||||||  ||  |  |  ||| ||||| |||| ||||| || |||||||| |||||||||| ||| |||| ||||||| | | ||||||||||| |    
T  6903604 ttgaagaaacacggcaattacattttcttttacaacgaatggcaagagtttgcaaaatactattcattaggatatggttgctacctatctttcaaatacg 6903505  T
Q  642 aagggaattcaaagttta 659  Q
    |||| |||||||||||||    
T  6903504 aaggaaattcaaagttta 6903487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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