View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_41 (Length: 342)
Name: NF16702_low_41
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 41062383 - 41062697
Alignment:
| Q |
11 |
ttattctctaatgtacatgtttgtgacaggaccccatctataccatgacatcgaattgaagatccagacacacatatgtttgggctaataatctttacat |
110 |
Q |
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| T |
41062383 |
ttattctctaatgtacatgtttgtgacaagaccccatctataccatgacatcgaattgaagatccagacacacatatgtttgggctaataatctttacat |
41062482 |
T |
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| Q |
111 |
tgttgacaacaaaattcttcctaccattgttagatattctcatcatgcaatttggcaataaactaggaacggttgtgccactgggaaattgtttcaaggt |
210 |
Q |
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| T |
41062483 |
tgttgacaacaaaattcttcctaccattgttagatattctcattatgcaatttggcaataaactaggaacggttgtgccactaggaaattgtttcaaggt |
41062582 |
T |
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| Q |
211 |
gtcaaagagtagaggtgatggaattgaatgtcttaacaagaattcagaaacagattcttcttgaagcgtcacatttgcgagcattcgatcatttggcatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41062583 |
gtcaaagagtagaggtgatggaattgaatgtcttaacaagaatttagaaacagattcttcttgaagcgtcacatttgcgagcattcgatcatttggcatt |
41062682 |
T |
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| Q |
311 |
aagaatgtcacgttt |
325 |
Q |
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| T |
41062683 |
aagaatgtcacgttt |
41062697 |
T |
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