View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_low_43 (Length: 330)

Name: NF16702_low_43
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_low_43
NF16702_low_43
[»] chr1 (21 HSPs)
chr1 (107-300)||(47661218-47661418)
chr1 (107-299)||(45828929-45829131)
chr1 (115-311)||(51337267-51337474)
chr1 (115-311)||(35255909-35256116)
chr1 (229-311)||(47505816-47505898)
chr1 (115-198)||(21144311-21144394)
chr1 (122-206)||(16281998-16282081)
chr1 (126-198)||(50617500-50617573)
chr1 (122-200)||(19521902-19521982)
chr1 (122-206)||(31780269-31780353)
chr1 (115-198)||(52805240-52805323)
chr1 (122-188)||(8548474-8548541)
chr1 (122-187)||(3728937-3729003)
chr1 (122-187)||(26879100-26879166)
chr1 (115-178)||(47505711-47505778)
chr1 (122-206)||(19159408-19159492)
chr1 (122-183)||(94721-94783)
chr1 (269-311)||(45330940-45330982)
chr1 (115-183)||(470750-470819)
chr1 (122-183)||(13636611-13636673)
chr1 (122-206)||(22527382-22527466)
[»] chr4 (16 HSPs)
chr4 (107-300)||(72291-72481)
chr4 (107-311)||(46439367-46439575)
chr4 (115-310)||(8111199-8111401)
chr4 (115-206)||(50278503-50278594)
chr4 (115-300)||(50196694-50196886)
chr4 (231-311)||(50020177-50020257)
chr4 (115-207)||(50020314-50020408)
chr4 (115-200)||(51492378-51492464)
chr4 (122-206)||(37016200-37016284)
chr4 (115-206)||(44674439-44674530)
chr4 (109-179)||(21534865-21534935)
chr4 (122-187)||(49168902-49168968)
chr4 (141-187)||(30723349-30723395)
chr4 (122-187)||(31425123-31425189)
chr4 (122-206)||(40355009-40355094)
chr4 (122-183)||(1305746-1305808)
[»] chr3 (27 HSPs)
chr3 (107-311)||(6928479-6928688)
chr3 (107-306)||(48566174-48566380)
chr3 (115-311)||(48891881-48892086)
chr3 (119-311)||(50759176-50759377)
chr3 (231-311)||(42804489-42804569)
chr3 (115-311)||(16861241-16861447)
chr3 (115-206)||(16646853-16646945)
chr3 (115-199)||(49265973-49266061)
chr3 (234-311)||(41615757-41615834)
chr3 (122-206)||(50213759-50213843)
chr3 (115-206)||(600224-600315)
chr3 (231-311)||(17561845-17561925)
chr3 (231-311)||(44233200-44233280)
chr3 (231-311)||(49265848-49265928)
chr3 (231-311)||(30252626-30252708)
chr3 (115-209)||(41615619-41615716)
chr3 (115-206)||(47070770-47070861)
chr3 (120-182)||(17561965-17562031)
chr3 (122-206)||(2271657-2271737)
chr3 (122-183)||(9473644-9473706)
chr3 (122-187)||(46697913-46697979)
chr3 (122-206)||(36133969-36134054)
chr3 (122-183)||(2648176-2648238)
chr3 (122-206)||(52388101-52388185)
chr3 (118-163)||(44233064-44233111)
chr3 (151-207)||(44233114-44233170)
chr3 (122-187)||(50477382-50477447)
[»] chr6 (11 HSPs)
chr6 (107-311)||(24085314-24085524)
chr6 (115-311)||(18001299-18001501)
chr6 (113-308)||(3384786-3384986)
chr6 (231-310)||(32643358-32643437)
chr6 (231-310)||(32641366-32641444)
chr6 (122-206)||(31771427-31771511)
chr6 (115-206)||(3502344-3502435)
chr6 (126-188)||(17996713-17996774)
chr6 (122-187)||(30826226-30826292)
chr6 (254-311)||(17996658-17996715)
chr6 (122-183)||(22304630-22304692)
[»] chr8 (15 HSPs)
chr8 (107-311)||(40075193-40075404)
chr8 (107-299)||(52436-52634)
chr8 (107-311)||(35554942-35555159)
chr8 (107-209)||(34819211-34819313)
chr8 (118-301)||(39831244-39831438)
chr8 (115-209)||(20859383-20859479)
chr8 (231-287)||(34819110-34819166)
chr8 (231-311)||(20859509-20859591)
chr8 (115-200)||(41239156-41239241)
chr8 (122-187)||(22084-22150)
chr8 (122-187)||(1055917-1055983)
chr8 (122-187)||(23018887-23018953)
chr8 (122-187)||(26662838-26662904)
chr8 (122-183)||(34367234-34367296)
chr8 (122-183)||(15033365-15033427)
[»] chr5 (15 HSPs)
chr5 (108-285)||(40622524-40622707)
chr5 (115-309)||(19227027-19227228)
chr5 (107-209)||(511223-511325)
chr5 (221-311)||(511108-511198)
chr5 (115-206)||(38407448-38407539)
chr5 (231-312)||(8698960-8699041)
chr5 (115-209)||(5200129-5200225)
chr5 (122-206)||(7761930-7762014)
chr5 (122-187)||(28238341-28238407)
chr5 (140-206)||(41799475-41799540)
chr5 (234-311)||(5200266-5200343)
chr5 (122-206)||(8577132-8577216)
chr5 (122-206)||(27662371-27662455)
chr5 (122-206)||(30708438-30708522)
chr5 (141-206)||(8256-8320)
[»] chr7 (18 HSPs)
chr7 (115-312)||(47521470-47521678)
chr7 (118-299)||(16680832-16681021)
chr7 (118-299)||(17655068-17655257)
chr7 (231-311)||(9491494-9491574)
chr7 (231-311)||(47669694-47669774)
chr7 (115-311)||(27450199-27450392)
chr7 (115-199)||(34742076-34742160)
chr7 (118-209)||(19801873-19801966)
chr7 (122-206)||(5538146-5538230)
chr7 (126-188)||(11100351-11100412)
chr7 (122-206)||(10522202-10522286)
chr7 (122-206)||(17838322-17838406)
chr7 (244-312)||(19804409-19804477)
chr7 (122-206)||(13323404-13323486)
chr7 (122-187)||(35606991-35607057)
chr7 (115-182)||(36980910-36980979)
chr7 (122-187)||(41883931-41883997)
chr7 (254-311)||(11100410-11100467)
[»] chr2 (14 HSPs)
chr2 (231-311)||(40539001-40539081)
chr2 (231-311)||(36652966-36653046)
chr2 (109-172)||(16327622-16327685)
chr2 (115-207)||(36653098-36653192)
chr2 (117-198)||(6637690-6637773)
chr2 (122-206)||(29398207-29398291)
chr2 (122-206)||(32953032-32953116)
chr2 (115-206)||(10825520-10825611)
chr2 (236-311)||(6637620-6637695)
chr2 (122-187)||(5355362-5355428)
chr2 (122-187)||(30493561-30493627)
chr2 (122-187)||(43536304-43536370)
chr2 (122-206)||(39950858-39950942)
chr2 (231-296)||(16327494-16327559)
[»] scaffold0219 (1 HSPs)
scaffold0219 (231-306)||(323-398)
[»] scaffold0199 (1 HSPs)
scaffold0199 (141-183)||(12727-12769)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 107 - 300
Target Start/End: Original strand, 47661218 - 47661418
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||  |||||||||||||    
T  47661218 catttcattgggatattttactttgtttaatggtaaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtgaattgaaccattatg 47661317  T
Q  207 cgtnnnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttc 299  Q
    |||           ||||||||||       |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  47661318 cgtaaaaaaaaacaggtacatatgttgtgttttgtgtttgaaacacattacaggtttagaaaatgaagctactgcctctgctttggcttcaggacgcttc 47661417  T
Q  300 g 300  Q
    |    
T  47661418 g 47661418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 107 - 299
Target Start/End: Original strand, 45828929 - 45829131
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  45828929 catttcagtgggatattttactttgtttaatggtaaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtgatttgaaccattatg 45829028  T
Q  207 cgt---nnnnnnnnnnnggtacatatgttg-------tgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgc 296  Q
    |||              | |||||||||||       |||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  45829029 cgtaaaaaataaaaacagatacatatgttgtgttttttgtttgaaacacattacaggttcaggaaatgaagctactgcctctgatttggcttcaggacgc 45829128  T
Q  297 ttc 299  Q
    |||    
T  45829129 ttc 45829131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 311
Target Start/End: Original strand, 51337267 - 51337474
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgt--n 210  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |       
T  51337267 tgggatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgccaatatttattttgtgatttgaaccattatgcataaa 51337366  T
Q  211 nnnnnnnnnnggtacata-------tgttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggta 303  Q
               |||||||       | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||| |    
T  51337367 taaataaataagtacatatattgtgttttgtgtttgaaacacattacaggtttaggaaatgaagctactgcctctgccttggcttcaggacacttcggca 51337466  T
Q  304 gtttactg 311  Q
    ||||||||    
T  51337467 gtttactg 51337474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 35256116 - 35255909
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgt--n 210  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |       
T  35256116 tgggatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtgatttgaaccattatgcataaa 35256017  T
Q  211 nnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggta 303  Q
              ||||||||||       |||||||||||||| |||||||||| || ||||||||||| ||||||||| |||||||||||| ||||||| |    
T  35256016 aaaaaaaacaggtacatatgttgtgttttgtgtttgaaacaaattacaggttcaacaaatgaagctattgcctctgccttggcttcaggatgcttcggca 35255917  T
Q  304 gtttactg 311  Q
    ||||||||    
T  35255916 gtttactg 35255909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 47505816 - 47505898
Alignment:
Q  229 tgttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    |||| |||||||||||||||||||||| | |||||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  47505816 tgttttgtttgaaacacattacaggttcaggaaatgaagctactgcctctgtcttggcttcaggacgcttcggcagtttactg 47505898  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 21144311 - 21144394
Alignment:
Q  115 tgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaa 198  Q
    |||||| |||||||||||||||||   |||||||| ||||||||| |||||||||||| |||||||||| ||||||| ||||||    
T  21144311 tgggattttttactttgtttaatgtataaaatgttggtttaattatgttgtgcatttgcgccaatattttttttgtgatttgaa 21144394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 16282081 - 16281998
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||  ||||||| |||||||| |||||    
T  16282081 ttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatatt--ttttgtgatttgaaccgttatg 16281998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 50617573 - 50617500
Alignment:
Q  126 actttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaa 198  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  50617573 actttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatattttttttgtgatttgaa 50617500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 19521982 - 19521902
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaata-tttattttgtgctttgaacc 200  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||| ||| ||||||| ||||||||    
T  19521982 ttttactttgtttaatgcataaaaatgttggtttaattaagttgtgcatttgcgccaatatttttttttgtgatttgaacc 19521902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 31780353 - 31780269
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||| |||||    
T  31780353 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgttatttgaaccgttatg 31780269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 52805240 - 52805323
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaa 198  Q
    |||||| |||||||||||||||||  |||||||||| ||||||||| ||||||||||||  ||||||||| ||||||| ||||||    
T  52805240 tgggattttttactttgtttaatgtataaaaatgttggtttaattatgttgtgcatttgcaccaatattt-ttttgtgatttgaa 52805323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 8548474 - 8548541
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttatttt 188  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  8548474 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttatttt 8548541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 3729003 - 3728937
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  3729003 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 3728937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 26879100 - 26879166
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  26879100 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 26879166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 47505711 - 47505778
Alignment:
Q  115 tgggatattttactttgtttaatgg----taaaaatgttagtttaattaagttgtgcatttgtgccaa 178  Q
    |||||||||||||||||||||||||    |||||||||| |  |||||||||||||||||||||||||    
T  47505711 tgggatattttactttgtttaatggtatataaaaatgttggcctaattaagttgtgcatttgtgccaa 47505778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 19159408 - 19159492
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  ||||||||| ||||||  |||||||| |||||    
T  19159408 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatattt-ttttgttatttgaaccgttatg 19159492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 94783 - 94721
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||||||| || |||||||    
T  94783 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcgctaatattt 94721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 45330982 - 45330940
Alignment:
Q  269 tactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  45330982 tactgcctctgctttggtttcaggacacttcggtagtttactg 45330940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 470750 - 470819
Alignment:
Q  115 tgggatattttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||| |||||||| ||||||||   ||||||||| |||||||||||||||| ||||| ||||||||||    
T  470750 tgggattttttacttagtttaatgtacaaaaatgtttgtttaattaagttgtgtatttgcgccaatattt 470819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 13636673 - 13636611
Alignment:
Q  122 ttttactttgtttaatggtaaaaat-gttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||||||||||||||   ||||| ||| ||||||||||||||||||||||  |||||||||    
T  13636673 ttttactttgtttaatgtacaaaattgttggtttaattaagttgtgcatttgcaccaatattt 13636611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 22527382 - 22527466
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| ||||||||||||||| ||||||  |||||| || ||||||  |||||||| |||||    
T  22527382 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtacatttgcaccaataatt-ttttgttatttgaaccgttatg 22527466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 107 - 300
Target Start/End: Original strand, 72291 - 72481
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||| |||||||||    
T  72291 catttcattggattattttactttgtttaatggtaaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtgatttggaccattatg 72390  T
Q  207 cgtnnnnnnnnnnnggtacatatgttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcg 300  Q
    |||           ||||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||    
T  72391 cgt---aaaaaaaaggtacatttgttgtgtttgaaacacattacaagtttagtaaatgaagctactgcctctgctttggcttcaggacgcttcg 72481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 107 - 311
Target Start/End: Original strand, 46439367 - 46439575
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||  ||||||||| ||  ||| ||||||||||||||    
T  46439367 catttcattgggatattttactttatttaatggtaaaaatattggtttaattaagttttgcatttgcaccaatatttgtt--gtgatttgaaccattatg 46439464  T
Q  207 cgtnnnnnnnnnnnggtacatatgttgt-------gtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttc 299  Q
    |||           ||||||||||||||       ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46439465 cgtaaaaaaaaca-ggtacatatgttgtgttttgtgtttgaaacacattataggtttaggaaatgaagctactgcctctgctttggcttcaggacgcttc 46439563  T
Q  300 ggtagtttactg 311  Q
    ||  ||||||||    
T  46439564 ggctgtttactg 46439575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 115 - 310
Target Start/End: Original strand, 8111199 - 8111401
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnn 212  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||| |||||   |||||| | |||||| |       
T  8111199 tgggatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgccatttgaagcgttatgcataaa 8111298  T
Q  213 nnnnnnnnggtacatatgttgt-------gtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagt 305  Q
            ||||||||||||||       ||||||||||||||||||||| | |||||||||||||||||||||  |||||||||||||||||||| |||    
T  8111299 aaaaaa--ggtacatatgttgtgttttgtgtttgaaacacattacaggttcaggaaatgaagctactgcctctgacttggcttcaggacgcttcggcagt 8111396  T
Q  306 ttact 310  Q
    |||||    
T  8111397 ttact 8111401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 50278503 - 50278594
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||    
T  50278503 tgggattttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgtgatttgaaccgttatg 50278594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 115 - 300
Target Start/End: Original strand, 50196694 - 50196886
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnn 212  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||| |||||||| |||||||||| | |||   |||||||| |||||| |       
T  50196694 tgggatattttactttgtttaatggtataaaaatgttggtttaattaagttatgcatttgcgccaatatttgtgttgccatttgaaccgttatgcat--a 50196791  T
Q  213 nnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcg 300  Q
            ||||||||||       |||||||||||||||||| |||||| | ||||||||||| || ||||||  |||||||||||||||||||    
T  50196792 aaaaaaaaggtacatatgttgtattttgtgtttgaaacacattgcaggttcaggaaatgaagctcctacctctgtcttggcttcaggacgcttcg 50196886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 50020257 - 50020177
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||||||||||| | ||||||||||||| |||||||  |||| ||||||||||||| | |||||||||    
T  50020257 ttgtgtttgaaacacattacaggttcaggaaatgaagctaccgcctctgtcttggtttcaggacgcttcagcagtttactg 50020177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 50020408 - 50020314
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgc 207  Q
    |||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||| ||| |||||| |||||   |||||||| ||||||    
T  50020408 tgggatattttactttgtttaatggtataaaaatgttggcttaattaagttgtgcatttgcgcccatatttgttttgccatttgaaccgttatgc 50020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 51492464 - 51492378
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaacc 200  Q
    |||||| |||||||||||||||||  |||||||||| ||||||| |||||||||||||| |||||||||| ||||||  ||||||||    
T  51492464 tgggattttttactttgtttaatgtataaaaatgttggtttaataaagttgtgcatttgcgccaatattttttttgttatttgaacc 51492378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 37016284 - 37016200
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  |||||||||| ||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||||    
T  37016284 ttttactttgtttaatgtataaaaatgttggtttaattaagttgttcatttgcgccaatattt-ttttgtgatttgaaccgttatg 37016200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 44674530 - 44674439
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||| ||||| ||||||  ||||||| ||||||    
T  44674530 tgggattttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccagtattt-ttttgttatttgaactattatg 44674439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 21534935 - 21534865
Alignment:
Q  109 tttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaat 179  Q
    |||||||||||||| ||||||| |||||||||||||||||| || |||||||  |||| ||||| ||||||    
T  21534935 tttcattgggatatcttactttctttaatggtaaaaatgttggtgtaattaatgtgtgaatttgcgccaat 21534865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 49168902 - 49168968
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  49168902 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 49168968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 30723395 - 30723349
Alignment:
Q  141 aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  30723395 aaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 30723349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 31425123 - 31425189
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  | |||||||||||    
T  31425123 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcacaaatatttattt 31425189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 40355094 - 40355009
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||  || ||||||  |||||||| |||||    
T  40355094 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaattatttttttgttatttgaaccgttatg 40355009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 1305808 - 1305746
Alignment:
Q  122 ttttactttgtttaatggtaaaaat-gttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||||||||||||||   ||||| ||| ||||||||||||||||||||||  |||||||||    
T  1305808 ttttactttgtttaatgtacaaaattgttggtttaattaagttgtgcatttgcaccaatattt 1305746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 107 - 311
Target Start/End: Original strand, 6928479 - 6928688
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||    
T  6928479 catttcattgggatattttactttgtttaatggtaaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtgatttaaaccattatg 6928578  T
Q  207 cgtnnnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttc 299  Q
    |||           ||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  6928579 cgt--aaaaaaacaggtacatatgttgtgttttgtgtttgaaacacattacaggtttaggaaatgaagctactgcctctgctttggcttcacgacacttc 6928676  T
Q  300 ggtagtttactg 311  Q
    ||| ||||||||    
T  6928677 ggttgtttactg 6928688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 48566174 - 48566380
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||    
T  48566174 catttcattgggatattttactttgtttaatggtaaaaatgttggtttaattaagttgtgcatttgcgccaatattcgttttgtgatttgaaccattatg 48566273  T
Q  207 cgtnnnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttc 299  Q
    |||           |||||| |||       ||||||||||||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||    
T  48566274 cgtaaaaaaaaacaggtacacatgttgtgttttgtgtttgaaacacattacaagtttaggaaatgaagctactgcctctaccttggcttcaggacgcttc 48566373  T
Q  300 ggtagtt 306  Q
    |||||||    
T  48566374 ggtagtt 48566380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 311
Target Start/End: Original strand, 48891881 - 48892086
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnn 212  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |       
T  48891881 tgggatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtgatttgaaccattatgcataaa 48891980  T
Q  213 nnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagt 305  Q
            ||||||||||       ||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||| ||||||||||| |||    
T  48891981 aaaaaactggtacatatgttgtgttttgtgtttgaaacacattagaggttcaggaaatgaagctactgcctctgccttggcttcgggacgcttcggcagt 48892080  T
Q  306 ttactg 311  Q
    ||||||    
T  48892081 ttactg 48892086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 311
Target Start/End: Original strand, 50759176 - 50759377
Alignment:
Q  119 atattttactttgtttaatggta--aaaatgttag-tttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnnnnn 215  Q
    |||||||||||||||||||||||  |||||||| | ||||||||||||||||||||| || ||||||| ||||||| ||||||||||||||| |          
T  50759176 atattttactttgtttaatggtataaaaatgtttggtttaattaagttgtgcatttgcgcaaatatttgttttgtgatttgaaccattatgcataaaaat 50759275  T
Q  216 nnnnnggtacatatgttgt-------gtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagttta 308  Q
         ||||||||||||||       ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  50759276 aaca-ggtacatatgttgtgttttgtgtttgaaacacattacaggttcatgaaatgaagctactgcctctgccttggcttcaggacgcttcggcagttta 50759374  T
Q  309 ctg 311  Q
    |||    
T  50759375 ctg 50759377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 42804569 - 42804489
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  42804569 ttgtgtttgaaacacattacaggttcaggaaatgaagctactgcctctgctttggcttcaggacgcttcggcagttaactg 42804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 16861447 - 16861241
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgt--n 210  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| || ||||||| |||||   ||||||||||||||| |       
T  16861447 tgggatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgcaaatatttgttttgccatttgaaccattatgcataaa 16861348  T
Q  211 nnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggta 303  Q
              ||||||||||       ||||||||||||||||||||||||| | ||||||||||||||||||||  | | ||||||||||||||||| |    
T  16861347 aaaaaaaacaggtacatatgttgtgttttgtgtttgaaacacattacaggttcaggaaatgaagctactgcctct-atcttgcttcaggacgcttcggca 16861249  T
Q  304 gtttactg 311  Q
    ||||||||    
T  16861248 gtttactg 16861241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 16646853 - 16646945
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||| |||||    
T  16646853 tgggattttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgtgccaatattttttttgttatttgaaccgttatg 16646945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 49266061 - 49265973
Alignment:
Q  115 tgggatattttactttgtttaatggta----aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaac 199  Q
    |||||||||||||||||||||||||||    |||||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  49266061 tgggatattttactttgtttaatggtacaaaaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtcatttgaac 49265973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 41615757 - 41615834
Alignment:
Q  234 tgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||| |||||| | ||||||||||| |||||||||  |||||||||||||||||||| |||||||||    
T  41615757 tgtttgaaacacattgcaggttcaggaaatgaagctgctgcctctgtcttggcttcaggacgcttcggcagtttactg 41615834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 50213843 - 50213759
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||    
T  50213843 ttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgtgatttgaaccgttatg 50213759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 600224 - 600315
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||| |||||    
T  600224 tgggattttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgttatttgaaccgttatg 600315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 17561925 - 17561845
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    |||||||||||||||||||||| || | ||||||||||||||| |||||  ||||||||||||| |||||| |||||||||    
T  17561925 ttgtgtttgaaacacattacagattcaggaaatgaagctactgtctctgtcttggcttcaggacacttcggcagtttactg 17561845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 44233200 - 44233280
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||  ||||||||||||||| |||  |||||||||    
T  44233200 ttgtgtttgaaatacattacaggttcaggaaatgaagctactgcctctgtcttggcttcaggacgcatcgacagtttactg 44233280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 49265928 - 49265848
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||||||||||| | |||||||||||| | |||||| |||||||||| |||||||| | |||||||||    
T  49265928 ttgtgtttgaaacacattacaggttcaggaaatgaagctagtacctctgttttggcttcaagacgcttctgcagtttactg 49265848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 30252708 - 30252626
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgc--tttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| |||  |||||||| |||||||||||| | |||||||    
T  30252708 ttgtgtttgaaacacattacaggtttaggaaatgaagctattgcctttgccttttggctttaggacgcttcggcaatttactg 30252626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 41615619 - 41615716
Alignment:
Q  115 tgggatattttactttgttt-aatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgt 209  Q
    |||||||||||||||||||| |||||||  |||||||| |||||||||| ||||||||||| |||||||||| |||||   |||||||| ||||||||    
T  41615619 tgggatattttactttgttttaatggtataaaaatgttggtttaattaatttgtgcatttgcgccaatatttgttttgccgtttgaaccgttatgcgt 41615716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 47070861 - 47070770
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||||| ||||||||| |||||||||| ||||||  |||||||| |||||    
T  47070861 tgggattttttactttgtttaatgtataaaaatgttggtttaattaagtggtgcatttgcgccaatattt-ttttgttatttgaaccgttatg 47070770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 17562031 - 17561965
Alignment:
Q  120 tattttactttgtttaatggta----aaaatgttagtttaattaagttgtgcatttgtgccaatatt 182  Q
    ||||||||||||||||||||||    |||||||| |||||||||||||||||||||| |||||||||    
T  17562031 tattttactttgtttaatggtatataaaaatgttggtttaattaagttgtgcatttgcgccaatatt 17561965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 2271737 - 2271657
Alignment:
Q  122 ttttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||||||||||||   ||||||||| ||||||||||||||||||||||  ||||||||| ||||||  |||||||| |||||    
T  2271737 ttttactttgtttaat---aaaaatgttggtttaattaagttgtgcatttgcaccaatattt-ttttgttatttgaaccgttatg 2271657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 9473644 - 9473706
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||||||||| ||||||||||    
T  9473644 ttttactttgtttaatgtataaaaatgttgatttaattaagttgtgcatttgcgccaatattt 9473706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 46697979 - 46697913
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  46697979 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 46697913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 36133969 - 36134054
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   |||||| |  |||||||||||||||||||||| |||||||||| ||||||  |||||||| |||||    
T  36133969 ttttactttgtttaatgtacaaaaatatcggtttaattaagttgtgcatttgcgccaatattttttttgttatttgaaccgttatg 36134054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 2648238 - 2648176
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||    
T  2648238 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatattt 2648176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 52388185 - 52388101
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  ||||||| || ||||||||||||| |||||||| || ||||||| ||||||  |||||||| |||||    
T  52388185 ttttactttgtttaatgtataaaaatattggtttaattaagttttgcatttgcgctaatattt-ttttgttatttgaaccgttatg 52388101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 44233064 - 44233111
Alignment:
Q  118 gatattttactttgtttaatgg--taaaaatgttagtttaattaagtt 163  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||||    
T  44233064 gatattttactttgtttaatggtataaaaatgttggtttaattaagtt 44233111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 44233114 - 44233170
Alignment:
Q  151 gtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgc 207  Q
    |||||||||||||||||||||| |||||||||| |||||   |||||||| ||||||    
T  44233114 gtttaattaagttgtgcatttgcgccaatatttgttttgccatttgaaccgttatgc 44233170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 50477447 - 50477382
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||| ||||  |||||||||||||    
T  50477447 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgc-tttgcaccaatatttattt 50477382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 107 - 311
Target Start/End: Complemental strand, 24085524 - 24085314
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||  || ||||||||||||||    
T  24085524 catttcattgggatattttactttgtttaatggtaaaaatgttggtttaattaagttgtgcatttgcgccaatatttgtttcatgatttgaaccattatg 24085425  T
Q  207 cgtnnnnnnnnnnnggtacatatg------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcg 300  Q
    |||            |||||||||      |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  24085424 cgtaaaaaaaaataagtacatatgttttgtttgtgtttgaaatacattacaggtttaggaaatgaagctactgcctctgttttggcttcaggacgcttcg 24085325  T
Q  301 gtagtttactg 311  Q
    | |||||||||    
T  24085324 gcagtttactg 24085314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 18001501 - 18001299
Alignment:
Q  115 tgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnnnn 214  Q
    |||||||||| |||||||||||||| |||||| || |||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||| |         
T  18001501 tgggatatttgactttgtttaatggaaaaaatattggtttaattcagttgtgcatttgcgccaatatttgttttgtgatttgaaccattatgcat-aaaa 18001403  T
Q  215 nnnnnnggtacata-------tgttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagttt 307  Q
          | ||||||       | ||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||| |||  | |||||    
T  18001402 aaagcagatacatattttgtgttttgtgtttgaaacacattacaagtttaggaaatgaagctactgcctctgccttggcttcatgacacttatgcagttt 18001303  T
Q  308 actg 311  Q
    ||||    
T  18001302 actg 18001299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 308
Target Start/End: Original strand, 3384786 - 3384986
Alignment:
Q  113 attgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnn 212  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| ||| ||||||| ||||||||||| || ||       
T  3384786 attgggatattttactttctttaatggtaaaaatgttggtttaattaagttgtgcatttgcgccaat-tttgttttgtgatttgaaccattgtgtgtaaa 3384884  T
Q  213 nnnnnnnnggtacatatgttgtgttt-------gaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagt 305  Q
            |||  |||||||||||||       ||||||||||||| | | |  ||||||||||||||||||||| ||||||||||||||| || |||||    
T  3384885 aaaaaca-ggtcaatatgttgtgttttgtgtttgaaacacattacaagatcagaaaatgaagctactgcctctgcattggcttcaggacgcatcagtagt 3384983  T
Q  306 tta 308  Q
    |||    
T  3384984 tta 3384986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 32643358 - 32643437
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttact 310  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  32643358 ttgtgtttaaaacacattacaggttcaggaaatgaagctactgcctctgccttgacttcaggacgcttcggtagtttact 32643437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 32641444 - 32641366
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttact 310  Q
    |||||||||||||||||||||| || | |||||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  32641444 ttgtgtttgaaacacattacagatt-aggaaatgaagctactgcctctgccttgacttcaggacgcttcggcagtttact 32641366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 31771427 - 31771511
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||    
T  31771427 ttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgtgatttgaaccgttatg 31771511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 3502344 - 3502435
Alignment:
Q  115 tgggatattttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||   ||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||| |||||    
T  3502344 tgggattttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgttatttgaaccgttatg 3502435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 17996774 - 17996713
Alignment:
Q  126 actttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttatttt 188  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||    
T  17996774 actttgtttaatggtaaaa-tgttggtttaattaagttgtgcatttgcgccaatatttgtttt 17996713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 30826292 - 30826226
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  30826292 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 30826226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 17996715 - 17996658
Alignment:
Q  254 tttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    |||| |||||||||||||||||||||| |||||||||||||  ||||| |||||||||    
T  17996715 tttaggaaatgaagctactgcctctgccttggcttcaggacaattcggcagtttactg 17996658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 22304630 - 22304692
Alignment:
Q  122 ttttactttgtttaatggtaaaaat-gttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||||||||||||||   ||||| ||| ||||||||||||||||||||||  |||||||||    
T  22304630 ttttactttgtttaatgtacaaaattgttggtttaattaagttgtgcatttgcaccaatattt 22304692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 107 - 311
Target Start/End: Complemental strand, 40075404 - 40075193
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |||| || ||||||||||||||    
T  40075404 catttcgttgggatattttactttgtttaatggtaaaaatgttggtttaaataagttgtgcatttgcgccaatatttgttttttgatttgaaccattatg 40075305  T
Q  207 cgtnnnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttc 299  Q
    |||           ||||| ||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  40075304 cgtaaaaaaaaacaggtacgtatgttgtgttttgtgtttgaaacacattacaggtttaggaaatgaagctactgcctctgctttggcttcagaacgcttc 40075205  T
Q  300 ggtagtttactg 311  Q
    || |||||||||    
T  40075204 ggaagtttactg 40075193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 107 - 299
Target Start/End: Original strand, 52436 - 52634
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  52436 catttcattgggat-ttttactttgtttaatggtaaaaatgttggtttaattaagttgtgcatttgtgccaatatttgttttgtgatttgaaccattatg 52534  T
Q  207 cgtnnnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttc 299  Q
    |||           ||||||||||       ||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||    
T  52535 cgtaaaaaaaaattggtacatatgttgtgttttgtgtttgaaacacattacaggtttaggaaataaagctactgcctctgtcttggcttcaggacgcttc 52634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 311
Target Start/End: Original strand, 35554942 - 35555159
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||| ||||||| ||||||||||||||    
T  35554942 catttcattgggatattttactttgtttaatggtaaaaatgttggtttaattaagttgtgtatttgccccaatatttgttttgtgatttgaaccattatg 35555041  T
Q  207 cgt------nnnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcagga 293  Q
    | |                 ||||||||||       ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  35555042 cataaaaaaaaaaaaaaacaggtacatatgttgtgttttgtgtttgaaacacattacaggtttaggaaatgaagctactacctctgctttggcttcagga 35555141  T
Q  294 cgcttcggtagtttactg 311  Q
    |||||||  |||||||||    
T  35555142 cgcttcgacagtttactg 35555159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 34819313 - 34819211
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| || ||||||| ||||||| ||||||||||||||    
T  34819313 catttcattgggatattttactttgttgaatggtaaaaatgttggtttaattaagttgtgtatttgcgctaatatttgttttgtgatttgaaccattatg 34819214  T
Q  207 cgt 209  Q
    |||    
T  34819213 cgt 34819211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 301
Target Start/End: Complemental strand, 39831438 - 39831244
Alignment:
Q  118 gatattttactttgtttaatggta----aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnnn 213  Q
    ||||||||||||||||||||||||    |||||||| |||||||||||||||||||||| |||||||||| ||||||  ||| |||| |||||| |        
T  39831438 gatattttactttgtttaatggtatataaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtcattttaaccgttatgcataaaa 39831339  T
Q  214 nnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcgg 301  Q
           ||||||||||       |||||||||||||||||||||||||   ||||||||| || ||||||||  ||||||||||||||||||||    
T  39831338 aaaaacaggtacatatgttgtgttttgtgtttgaaacacattacaggttccggaaatgaagttaatgcctctgtcttggcttcaggacgcttcgg 39831244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 20859383 - 20859479
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgt 209  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||  ||||||||| |||||   |||||||| ||||||||    
T  20859383 tgggatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgccccaatatttgttttgccgtttgaaccgttatgcgt 20859479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 34819166 - 34819110
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggct 287  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  34819166 ttgtgtttgaaacatattacaggtttaggaaatgaagctactgcctctgttttggct 34819110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 20859509 - 20859591
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctc--tgctttggcttcaggacgcttcggtagtttactg 311  Q
    |||||||||||||||||| |||||| | |||||||||||||||||||  ||  |||||||||||||||||||| |||| ||||    
T  20859509 ttgtgtttgaaacacattgcaggttcaggaaatgaagctactgcctctttgtcttggcttcaggacgcttcggcagttaactg 20859591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 41239241 - 41239156
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaacc 200  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||||||||||||||  ||||||| || ||||||| ||||||||    
T  41239241 tgggattttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttacgccaatagtt-ttttgtgatttgaacc 41239156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 22150 - 22084
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  22150 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 22084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 1055917 - 1055983
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  1055917 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 1055983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 23018953 - 23018887
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  23018953 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 23018887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 26662838 - 26662904
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  26662838 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 26662904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 34367296 - 34367234
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||| ||| ||||||||||    
T  34367296 ttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcaattgcgccaatattt 34367234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 15033427 - 15033365
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    |||||||||||||||||   ||||||||| ||| ||||||||||||||||||  |||||||||    
T  15033427 ttttactttgtttaatgtacaaaaatgttggttaaattaagttgtgcatttgcaccaatattt 15033365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 285
Target Start/End: Complemental strand, 40622707 - 40622524
Alignment:
Q  108 atttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgc 207  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  40622707 atttcattgggatattttactttgtttaatggtaaaaatgttggtttaattaagatgtgcatttgcgccaatatttattttgtgatttgaaccattatgc 40622608  T
Q  208 gtnnnnnnnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttgg 285  Q
    ||            |||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40622607 gtaaaaaaaacaa-gtacatatgttgtgttttgtgtttgaaacacattacaggtttaggaaatgaagctactgcctctgctttgg 40622524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 19227228 - 19227027
Alignment:
Q  115 tgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnnnn 214  Q
    |||||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |         
T  19227228 tgggatatttgactttgtttgatgctaaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgtgatttgaaccattatgcataaaaa 19227129  T
Q  215 nnnnnnggtacatatg-------ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagttt 307  Q
          ||||||||||       ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||    
T  19227128 aaaacaggtacatatgttgtgttttgtgtttgaaacacattaaaggtttatgaaatgaagctactgcctctgccttggcttcaggacgcttcggcagttt 19227029  T
Q  308 ac 309  Q
    ||    
T  19227028 ac 19227027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 511325 - 511223
Alignment:
Q  107 catttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  511325 catttcattgggatattttactttgtttaatgctaaaaatgttggtttaattaagttgtgcatttgtgccaatatttgttttgtgatttgaaccattatg 511226  T
Q  207 cgt 209  Q
    |||    
T  511225 cgt 511223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 511198 - 511108
Alignment:
Q  221 ggtacatatgttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    |||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  511198 ggtacataagttgtgtttgcaacacattacatgtttaggaaatgaagctactgcctttgctttggcttcaggatgcttcggcagtttactg 511108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 38407539 - 38407448
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||    
T  38407539 tgggattttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgtgatttgaaccgttatg 38407448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 8699041 - 8698960
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactgt 312  Q
    |||| |||||||||||||||||||| | |||||||||||| ||||||||| ||| |||||||||||||||  ||||||||||    
T  8699041 ttgtttttgaaacacattacaggttcaggaaatgaagctattgcctctgccttgacttcaggacgcttcgacagtttactgt 8698960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 5200129 - 5200225
Alignment:
Q  115 tgggatattttactttgtttaatgg--taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgt 209  Q
    |||||||| ||||||||||||||||  |||||||||| |||||||||| || |||||||| |||||||||| |||||   |||||||| ||||||||    
T  5200129 tgggatatcttactttgtttaatggtataaaaatgttggtttaattaatttttgcatttgcgccaatatttgttttgccgtttgaaccgttatgcgt 5200225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 7761930 - 7762014
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||| |||||    
T  7761930 ttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgttatttgaaccgttatg 7762014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 28238407 - 28238341
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  28238407 ttttactttgtttaatgtacaaaaatgttcgtttaattaagttgtgcatttgcaccaatatttattt 28238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 41799475 - 41799540
Alignment:
Q  140 taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||| || |||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||    
T  41799475 taaaaatattggtttaattaagttgtgcatttgcgccaatattt-ttttgtgatttgaaccgttatg 41799540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 5200266 - 5200343
Alignment:
Q  234 tgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||| |||||| | ||||||||| |  ||||||||  ||||||||||||||||| || |||||||||    
T  5200266 tgtttgaaacacattgcaggttcaggaaatgaagttgttgcctctgtcttggcttcaggacgctttggcagtttactg 5200343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 8577216 - 8577132
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  ||||||||| ||||||  |||||||| |||||    
T  8577216 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatattt-ttttgttatttgaaccgttatg 8577132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 27662455 - 27662371
Alignment:
Q  122 ttttactttgtttaatggtaaaa-atgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||| ||||| ||||||||||||||||||||||  ||||||||| ||||||  |||||||| |||||    
T  27662455 ttttactttgtttaatgtacaaatatgttggtttaattaagttgtgcatttgcaccaatattt-ttttgttatttgaaccgttatg 27662371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 30708438 - 30708522
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| |||||||||| |||||||||||  ||||||||| ||||||  |||||||| |||||    
T  30708438 ttttactttgtttaatgtacaaaaatgttggtttaattaaattgtgcatttgcaccaatattt-ttttgttatttgaaccgttatg 30708522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 8320 - 8256
Alignment:
Q  141 aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    ||||||||| ||||||||||||||||||||||  |||| |||| ||||||  |||||||| |||||    
T  8320 aaaaatgttggtttaattaagttgtgcatttgcaccaagattt-ttttgttatttgaaccgttatg 8256  T

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Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 115 - 312
Target Start/End: Complemental strand, 47521678 - 47521470
Alignment:
Q  115 tgggatattttactttgtttaatggta----aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtn 210  Q
    |||||||||||||||||||||| ||||    |||||||| |||||||||||||||||||||| | |||||||| |||||   |||||||| |||||| |     
T  47521678 tgggatattttactttgtttaacggtatataaaaatgttggtttaattaagttgtgcatttgcgtcaatatttgttttgccatttgaaccgttatgcata 47521579  T
Q  211 nnnnnnnnnnggtacatatgttgtgttt-------gaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggta 303  Q
              ||||||||||||||||||       ||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| | |    
T  47521578 aaaaaaaacaggtacatatgttgtgttttgtgtttgaaacacattacaggttcaggaaatgaagctactgtctctgttttggcttcaggacgcttcagca 47521479  T
Q  304 gtttactgt 312  Q
    |||||||||    
T  47521478 gtttactgt 47521470  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 299
Target Start/End: Original strand, 16680832 - 16681021
Alignment:
Q  118 gatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnnnnn 215  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| ||||||||||||||||   ||||||||||||||| |          
T  16680832 gatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgccaatatttattttgccatttgaaccattatgcat-aaaaa 16680930  T
Q  216 nnnnnggtacata-------tgttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttc 299  Q
         ||||||||       | ||||||||||||||||||||||||| | |||||||||||||||||||||   |||||||||||||||||    
T  16680931 aaacaggtacatatattgtgttttgtgtttgaaacacattacaggttcaggaaatgaagctactgcctctgtcctggcttcaggacgcttc 16681021  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 299
Target Start/End: Original strand, 17655068 - 17655257
Alignment:
Q  118 gatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtnnnnnn 215  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| ||||||||||||||||   ||||||||||||||| |          
T  17655068 gatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgccaatatttattttgccatttgaaccattatgcat-aaaaa 17655166  T
Q  216 nnnnnggtacata-------tgttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttc 299  Q
         ||||||||       | ||||||||||||||||||||||||| | |||||||||||||||||||||   |||||||||||||||||    
T  17655167 aaacaggtacatatattgtgttttgtgtttgaaacacattacaggttcaggaaatgaagctactgcctctgtcctggcttcaggacgcttc 17655257  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 9491574 - 9491494
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | |||||||||    
T  9491574 ttgtgtttgaaacacattacaggtttaggaaatgaagctactgcctctgcattggcttcaggacgcttcagcagtttactg 9491494  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 47669774 - 47669694
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  47669774 ttgtgtttgaaacacattacaggttcaggaaatgaatctactgcctctgccttggcttcaggacgcttcggcagtttactg 47669694  T

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Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 27450392 - 27450199
Alignment:
Q  115 tgggatattttactttgtttaatggta----aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgtn 210  Q
    |||||||||||||||||||||||||||    |||||||| |||||||||||||||||||||| |||||||||| |||||   |||||||| ||||||||     
T  27450392 tgggatattttactttgtttaatggtatataaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgccatttgaaccgttatgcgta 27450293  T
Q  211 nnnnnnnnnnggtacatatgttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttact 310  Q
              |       | ||||||||||||||||||| ||||| | ||||||||| | |||||||||  |||||||||||||||||||  ||||||||    
T  27450292 catatgttgtg-------ttttgtgtttgaaacacattataggttcaggaaatgaagttcctgcctctgtcttggcttcaggacgcttcgacagtttact 27450200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 34742076 - 34742160
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaac 199  Q
    |||||| |||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  34742076 tgggattttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgtgccaatattt-ttttgtgatttgaac 34742160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 19801873 - 19801966
Alignment:
Q  118 gatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgcgt 209  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||| ||||    |||||||| ||||||||    
T  19801873 gatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgagccaatatttgttttactgtttgaaccgttatgcgt 19801966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 5538230 - 5538146
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||||||||  ||||||||| ||||||| |||||||| |||||    
T  5538230 ttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcaccaatattt-ttttgtgatttgaaccgttatg 5538146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 11100351 - 11100412
Alignment:
Q  126 actttgtttaatggtaaaaatgttagtttaattaagttgtgcatttgtgccaatatttatttt 188  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||    
T  11100351 actttgtttaatggtaaaa-tgttggtttaattaagttgtgcatttgcgccaatatttgtttt 11100412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 10522202 - 10522286
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||| |||||    
T  10522202 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgttatttgaaccgttatg 10522286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 17838322 - 17838406
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||| |||||    
T  17838322 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgttatttgaaccgttatg 17838406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 19804409 - 19804477
Alignment:
Q  244 acattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactgt 312  Q
    ||||| |||||| ||||||||||||| |||||||||  |||||||||||||||||||| |||| |||||    
T  19804409 acattgcaggttcaagaaatgaagctgctgcctctgtcttggcttcaggacgcttcggcagttaactgt 19804477  T

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Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 13323404 - 13323486
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||   || ||||||| |||||||| |||||    
T  13323404 ttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaa---tttttttgtgatttgaaccgttatg 13323486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 35607057 - 35606991
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  35607057 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 35606991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 36980910 - 36980979
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatt 182  Q
    ||||||||||||| |||||||| ||||  |||||||| |||||||||||||||||||||| | |||||||    
T  36980910 tgggatattttaccttgtttaaaggtataaaaatgttggtttaattaagttgtgcatttgcgtcaatatt 36980979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 41883931 - 41883997
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  41883931 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 41883997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 11100410 - 11100467
Alignment:
Q  254 tttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    |||| |||||||||||||||||||||| |||||||||||||  ||||| |||||||||    
T  11100410 tttaggaaatgaagctactgcctctgccttggcttcaggacaattcggcagtttactg 11100467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 40539001 - 40539081
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  40539001 ttgtgtttgaaacacattacaggttcaggaaatgaagctactgcctctgccttggcttcaggacgcttcgacagtttactg 40539081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 36653046 - 36652966
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||||||||||||| || |||||||||    
T  36653046 ttgtgtttgaaacacattacaggttcaggaaatgaagctactgcctctgtcttggcttcaggacgctttggcagtttactg 36652966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 16327685 - 16327622
Alignment:
Q  109 tttcattgggatattttactttgtttaatggtaaaaatgttagtttaattaagttgtgcatttg 172  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  16327685 tttcattgggatattttactttctttaatggtaaaaatgttggtttaattaagttgtgcatttg 16327622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 36653192 - 36653098
Alignment:
Q  115 tgggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatgc 207  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||| |||||   |||||||| ||||||    
T  36653192 tgggatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgccaatatttgttttgccatttgaaccgttatgc 36653098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 6637773 - 6637690
Alignment:
Q  117 ggatattttactttgtttaatggta--aaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaa 198  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||||||||||| | |||||||| ||||||| ||||||    
T  6637773 ggatattttactttgtttaatggtataaaaatgttggtttaattaagttgtgcatttgcgtcaatatttgttttgtgatttgaa 6637690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 29398291 - 29398207
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  29398291 ttttactttgtttaatgtataaaaatattggtttaattaagttgtgcatttgtgccaatattt-ttttgtgatttgaaccgttatg 29398207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 32953116 - 32953032
Alignment:
Q  122 ttttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||    
T  32953116 ttttactttgtttaatgtataaaaatgttggtttaattaagttgtgcatttgcgccaatattt-ttttgtgatttgaaccgttatg 32953032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 10825611 - 10825520
Alignment:
Q  115 tgggatattttactttgtttaatgg-taaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||| |||||||||||||||||  |||||||||| ||||| |||||||||||||||| |||||||||| ||||||  |||||||| |||||    
T  10825611 tgggattttttactttgtttaatgtataaaaatgttggtttagttaagttgtgcatttgcgccaatattt-ttttgttatttgaaccgttatg 10825520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 6637695 - 6637620
Alignment:
Q  236 tttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtttactg 311  Q
    |||||| ||||||||||||| | |||||||| ||||||||||||  ||| |||||||||||||||| |||||||||    
T  6637695 tttgaagcacattacaggttcaggaaatgaacctactgcctctgtcttgacttcaggacgcttcggcagtttactg 6637620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 5355362 - 5355428
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  5355362 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 5355428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 30493627 - 30493561
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  30493627 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 30493561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 43536370 - 43536304
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattt 187  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||  |||||||||||||    
T  43536370 ttttactttgtttaatgtacaaaaatgttggtttaattaagttgtgcatttgcaccaatatttattt 43536304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 39950858 - 39950942
Alignment:
Q  122 ttttactttgtttaatggt-aaaaatgttagtttaattaagttgtgcatttgtgccaatatttattttgtgctttgaaccattatg 206  Q
    |||||||||||||||||   ||||||||| |||||||||||||||||||||| | |||||||| ||||||  |||||||| |||||    
T  39950858 ttttactttgtttaatgtacaaaaatgtttgtttaattaagttgtgcatttgcgtcaatattt-ttttgttatttgaaccgttatg 39950942  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 16327559 - 16327494
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgc 296  Q
    ||||||||||||||||||||| | | |  ||||||||||||||||||| | ||||||| |||||||    
T  16327559 ttgtgtttgaaacacattacacgatcagaaaatgaagctactgcctctacattggcttgaggacgc 16327494  T

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Target: scaffold0219 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 323 - 398
Alignment:
Q  231 ttgtgtttgaaacacattacaggtttaagaaatgaagctactgcctctgctttggcttcaggacgcttcggtagtt 306  Q
    |||||||| |||||||||||||| | |  |||||||| | ||| |||||| |||||||||||| || |||||||||    
T  323 ttgtgttttaaacacattacaggatcagaaaatgaagtttctgtctctgcattggcttcaggatgcatcggtagtt 398  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 12769 - 12727
Alignment:
Q  141 aaaaatgttagtttaattaagttgtgcatttgtgccaatattt 183  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||    
T  12769 aaaaatgttggtttaattaagttgcgcatttgcgccaatattt 12727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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