View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_44 (Length: 329)
Name: NF16702_low_44
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 25974883 - 25974659
Alignment:
| Q |
18 |
agagctgacagatttcnnnnnnnctcaagctgaaaggaataactacttggatcagaagctggtaatatctagaatttatcatatttgtcaatcatttttt |
117 |
Q |
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| T |
25974883 |
agagctgacagatttcaaaaaaactcaagctgaaaggaataactacttggagcagaagctggtaatatctagaatttatcatatttgtcaatcatttttt |
25974784 |
T |
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| Q |
118 |
gtattttaattgcatgcgtgcattaaattggataagttcatcccagaaattatcaaaggatatgaaacttctctatctgaccatatttttagaatcttct |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25974783 |
gtattttaattgcatgcatgcattaaattggataagttcatcccagaaattatcaaaggatatgaaacttctctatctgaccatatttttagaatcttct |
25974684 |
T |
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| Q |
218 |
cgagtattttattcctttactagtt |
242 |
Q |
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| T |
25974683 |
cgagtattttattcctttactagtt |
25974659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 25974625 - 25974546
Alignment:
| Q |
239 |
agttgtcacttgcatgtatgctagttactcatttcactctatttttcctgattcacaaggttttggttccttgagttctt |
318 |
Q |
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| T |
25974625 |
agttgtcacttgcatgtatgcttgttactcatttcactctatttttcctgattcacaaggttttggttccttgagttctt |
25974546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 25959705 - 25959607
Alignment:
| Q |
108 |
atcattttttgtattttaattgcatgcgtgcattaaattggataagttcatcccagaaattatcaaaggatatgaaacttctctatctgaccatattttt |
207 |
Q |
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| T |
25959705 |
atcatattttgtatattactggcgtgtgtgcattaaattgtttaagttcatcccagaaattgtcaaa-gatatgaaacttctccatctaaccatgttttt |
25959607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 25959505 - 25959430
Alignment:
| Q |
132 |
tgcgtgcattaaattggataagttcatcccagaaattatcaaaggatatgaaacttctctatctgaccatattttt |
207 |
Q |
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||||||| |||||||| | ||| ||||| |||||| | ||||||||||||| ||||||||| || |||||||||| |
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| T |
25959505 |
tgcgtgctttaaattgtacaagctcatcacagaaaatgtcaaaggatatgacacttctctagctagccatattttt |
25959430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 25959363 - 25959301
Alignment:
| Q |
244 |
tcacttgcatgtatgctagttactcatttcactctatttttcctgattcacaaggttttggttcc |
308 |
Q |
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| T |
25959363 |
tcacttgcaagtaggcttgttactcatttcaccctgttt--cctgattcacaaggctttggttcc |
25959301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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