View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_45 (Length: 322)
Name: NF16702_low_45
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 38255747 - 38256053
Alignment:
| Q |
14 |
caaaggtataactttctatatttgtgaatctttctctagtgtgtgcctatttctattggcttaattaatcaatatagtatattttatattatgatgatag |
113 |
Q |
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| T |
38255747 |
caaaggtataactttctatatttgtgaatctttctctagtgtgtgcctatttctattggcttaattaatcaatatagtatattttatattatgatgatag |
38255846 |
T |
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| Q |
114 |
gttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcatagca |
213 |
Q |
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| T |
38255847 |
gttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcatagca |
38255946 |
T |
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| Q |
214 |
gatatcaatgatgaattgggtcaccaacttgcaacttcaattgggttagacaaagtgagttaccaccactgtgacgtgagagaggagaaacaagttgagc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38255947 |
gatatcaatgatgaattgggtcaccaacttgcaacttcaattgggttagacaaagtgagttaccaccactgtgacgtgagagaggagaaacaagttgagg |
38256046 |
T |
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| Q |
314 |
aaattgt |
320 |
Q |
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||||||| |
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| T |
38256047 |
aaattgt |
38256053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 110 - 312
Target Start/End: Original strand, 45152019 - 45152221
Alignment:
| Q |
110 |
ataggttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcat |
209 |
Q |
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| T |
45152019 |
ataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcatttgtagttat |
45152118 |
T |
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| Q |
210 |
agcagatatcaatgatgaattgggtcaccaacttgcaacttcaattgggttagacaaagtgagttaccaccactgtgacgtgagagaggagaaacaagtt |
309 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || ||||||||| |
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| T |
45152119 |
agcagatatcaatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagtgatgaaaaacaagtt |
45152218 |
T |
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| Q |
310 |
gag |
312 |
Q |
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||| |
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| T |
45152219 |
gag |
45152221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 110 - 311
Target Start/End: Original strand, 45141376 - 45141577
Alignment:
| Q |
110 |
ataggttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcat |
209 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||| |||||||| || || ||| |||| ||| ||||||||||||||||||||||| || |
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| T |
45141376 |
ataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagcgaagacattcgtggaaaatggagcatttgtagttat |
45141475 |
T |
|
| Q |
210 |
agcagatatcaatgatgaattgggtcaccaacttgcaacttcaattgggttagacaaagtgagttaccaccactgtgacgtgagagaggagaaacaagtt |
309 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||| |
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| T |
45141476 |
agcagatatcaatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagtt |
45141575 |
T |
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| Q |
310 |
ga |
311 |
Q |
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|| |
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| T |
45141576 |
ga |
45141577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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