View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_low_46 (Length: 320)

Name: NF16702_low_46
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_low_46
NF16702_low_46
[»] chr2 (1 HSPs)
chr2 (19-313)||(3162654-3162945)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 3162945 - 3162654
Alignment:
Q  19 ttaactacatattaataatttagaacaggtacttttaagnnnnnnnn--ccacataggtccttttaagttccattacgtgtgcaccgttacccttttcac 116  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3162945 ttaactacatattaataatttagaacaggtacttttaagttttttttttccacataggtccttttaagttccattacatgtgcaccgttacccttttcac 3162846  T
Q  117 acattctgttacaaaaatgtacatgtgtttgttatgttaatgtgtcgtgtcatgaacaaagtttattctacgtgtacccctttctcatctcctaggtgtt 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3162845 acattctgttacaaaaatatacatgtgtttgttatgttaatgtgtc-----atgaacaaagtttattctacgtgtacccctttctcatctcctaggtgtt 3162751  T
Q  217 tgttaggctatatgacttggaacaaatattgccctctgagaatttgtacattaggaggtgaatacgtctggggatacaaaatcaattcttcttctct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  3162750 tgttaggctatatgacttggaacaaatattgccctctgagaatttgtacattgggaggtgaatacgtctggggatacaaaatcaattcctcttctct 3162654  T

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