View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_47 (Length: 319)
Name: NF16702_low_47
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 42 - 314
Target Start/End: Complemental strand, 14260038 - 14259761
Alignment:
| Q |
42 |
ttgaataacatcttggtatgattaccgtgattctgaaaagtgggt-tccctggatttaattaaatacattagctatgagttttaaccttttttagtgaaa |
140 |
Q |
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| T |
14260038 |
ttgaataacatcttggtataagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaa |
14259939 |
T |
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| Q |
141 |
ttgtgaaatttgttaattacat----ttccattacttgatctttccaagaaaaaccaccacacatgcattggtagaagatccagatagtataaaatcgat |
236 |
Q |
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| T |
14259938 |
ttgtgaaatctgttaattacttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgtt |
14259839 |
T |
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| Q |
237 |
caagtcatccacaaaatgaccatggagaatacacttgaatcgataactaaaatataccaaaaacattttcatctcact |
314 |
Q |
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| T |
14259838 |
caagtcatccacaaaatgatcatggagaatacatttgaatcgataactaaaatataccaaaaacattttcatatcact |
14259761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 154 - 306
Target Start/End: Complemental strand, 14265447 - 14265298
Alignment:
| Q |
154 |
taattacatttccattacttgatctttccaagaaaaaccaccacacatgcattggtagaagatccagatagtataaaatcgatcaagtcatccacaaaat |
253 |
Q |
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| T |
14265447 |
taattacatttccataactcgatctttccaagaaaaaccaccacacgtgaattgtcaaaagatcca--tagtataaaatcggtcaagtcatctacaaaat |
14265350 |
T |
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| Q |
254 |
gaccatggagaatacacttgaatcgataactaaaatataccaaaaacattttc |
306 |
Q |
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| T |
14265349 |
ggtcatgaagaatacacttgaatcgataact-aaatataccataaacattttc |
14265298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 42 - 306
Target Start/End: Original strand, 22145934 - 22146200
Alignment:
| Q |
42 |
ttgaataacatcttggtatgattaccgtgattctgaaaagtgggt-tccctggatttaattaaatacattagctatgagttttaacctttttt--agtga |
138 |
Q |
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||||||||||||||||||| |||| |||||| ||||| ||| ||| | |||||||||| |||||| ||||||| |||||||||| |||||| | | |
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| T |
22145934 |
ttgaataacatcttggtataattatcgtgatcctgaatagtaggtatgcctggatttacctaaatatattagctttgagttttaattttttttttaccgg |
22146033 |
T |
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| Q |
139 |
aattgtgaaatttgttaattacatttccattacttgatctttccaagaaaaaccaccacacatgcattggtagaagatccagatagtataaaatcgatca |
238 |
Q |
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| T |
22146034 |
atttgtgaaatttgttaattaccttaccataatttgatctttccaaggaaaactaccacacatgcattgtcagaagatcctgatagtataaaatcggtga |
22146133 |
T |
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| Q |
239 |
agtcatccacaaaatgaccatggagaatacacttgaatcgataactaaaatataccaaaaacattttc |
306 |
Q |
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| T |
22146134 |
agtcatccacaaaacggccatggagaatacacttgaatcggtatct-aaatataccataatcattttc |
22146200 |
T |
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