View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_low_48 (Length: 319)

Name: NF16702_low_48
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_low_48
NF16702_low_48
[»] chr2 (1 HSPs)
chr2 (15-303)||(29062075-29062363)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 29062363 - 29062075
Alignment:
Q  15 aatattatcctctcctaaagcgtttgataatgggatcatagttccaatattgtcaacgatatcagaggaaagatggggagtaaaattctcaacatccgaa 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29062363 aatattatcctctcctaaagcgtttgatagtgggatcatagttccaatcttgtcaacgatatcagaggaaagatggggagtaaaattctcaacatccgaa 29062264  T
Q  115 tcaccattatctctcacaaagcaacacaatggtgtatttaaattttgaacgttaatgtcatccctccgaagagggcaaagattcttaatattagaaatat 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  29062263 tcaccattatctctcacaaagcgacacaatggtgtatttaaattttgaacgttaatgtcatccttccgaagagggcaaaaattcttaatattagaaatat 29062164  T
Q  215 gattatcattgtcttcgtaaaataatatcttcttaaacaacactttcaaaaatttccaggcttaagaaaatatgaatcaagtaaccaac 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29062163 gattatcattgtcttcgtaaaataatatcttcttaaacaacactttcaaaaatttacaggcttaagaaaatatgaatcaagtaaccaac 29062075  T

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