View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_49 (Length: 316)
Name: NF16702_low_49
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_49 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 11143952 - 11143655
Alignment:
| Q |
1 |
tattgaacacaaccactcaaaatgttaagttatgagagaaataacaagatcttgaatattattgataatagcttgatgctaacttgatacaaactagaaa |
100 |
Q |
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| T |
11143952 |
tattgaacacaaccactcaaaatgttacgttatgagagaaataacgagatcttgaatattattgataatagcttgatgctaacttgatacaaactagaca |
11143853 |
T |
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| Q |
101 |
ctagcccctatatacagagatacgagactctaataatgaaaagggaaattaagaccaaacatttgaaggagaacaaggtttgaaagactagacatttgaa |
200 |
Q |
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| T |
11143852 |
ctaacccctatatacagagatacgagactctaataatgaagagggaaattaagaccagacatttgaaggagaacaaggtttgaaagactagacatttgaa |
11143753 |
T |
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| Q |
201 |
ggttgatcaaacctcgtgatgggataggctttgaaacattagaattaaaataaagaacaaactggacctaactcaacgcgagaatctaactccgaggg |
298 |
Q |
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| T |
11143752 |
ggttgatcaaacctcgtgatgggataggctttgaaacattagaattaaaataaagaacaaactggacctaactcaacgcgagaatctaactccaaggg |
11143655 |
T |
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Target: scaffold0392 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 9760 - 9709
Alignment:
| Q |
42 |
taacaagatcttgaatattattgataatagcttgatgctaacttgatacaaa |
93 |
Q |
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| T |
9760 |
taacaagagcttgaatattattgataatagtttgatgctaacttgatacaaa |
9709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 18313664 - 18313725
Alignment:
| Q |
32 |
atgagagaaataacaagatcttgaatattattgataatagcttgatgctaacttgatacaaa |
93 |
Q |
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| T |
18313664 |
atgagaaaaataataagagtttgaatattattgataatagcttgatacaaacttcatacaaa |
18313725 |
T |
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