View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16702_low_53 (Length: 305)
Name: NF16702_low_53
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_53 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 36314877 - 36315162
Alignment:
| Q |
1 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36314877 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
36314976 |
T |
|
| Q |
101 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaat |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36314977 |
tactctttgtcccatttgggtaaagttgttgaagcaaaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaat |
36315076 |
T |
|
| Q |
201 |
gatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatcttcttctaagtcaa |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36315077 |
gatcattggtttcctatcttgacattctattttgagaacaccagagtaatctagtgataaaactgttgaatcttcttctgagtcaa |
36315162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 24)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 19504283 - 19504544
Alignment:
| Q |
1 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
19504283 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgagatcaaaatgtatgttggataatcaaaactctgccataata |
19504382 |
T |
|
| Q |
101 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||| |||| |||||| |
|
|
| T |
19504383 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttaccggtgtctaacatagtggccacagtgtcgttggttggttgaggcgaagagtaaat |
19504482 |
T |
|
| Q |
201 |
gatcattggt---ttcctatcttgacattctattttgagcacaccagagtaatctagtgata |
259 |
Q |
| |
|
||| |||||| ||||||| |||| ||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
19504483 |
gattattggtaaattcctattttgaaattctattttgagcacaccagagtagtctaatgata |
19504544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 19469728 - 19469993
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| | || |||||||||||| |||||||||||||||||| |
|
|
| T |
19469728 |
tgaaaccaatgaccatttatgtccagtttttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatata |
19469827 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||| |||||||| |
|
|
| T |
19469828 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatga |
19469927 |
T |
|
| Q |
203 |
tcattgg---tttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
| ||||| |||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19469928 |
ttattggtaatttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactg |
19469993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 19540652 - 19540917
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| | || |||||||||||| |||||||||||||||||| |
|
|
| T |
19540652 |
tgaaaccaatgaccatttatgtccagtttttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatata |
19540751 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||| |||||||| |
|
|
| T |
19540752 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatga |
19540851 |
T |
|
| Q |
203 |
tcattgg---tttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
| ||||| |||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19540852 |
ttattggtaatttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactg |
19540917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 19592046 - 19591781
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| | || |||||||||||| |||||||||||||||||| |
|
|
| T |
19592046 |
tgaaaccaatgaccatttatgtccagtttttcgattaactcccaacttcatcattgggatcaatacgtctgtgggataatcgaaactctgccataatata |
19591947 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||| |||||||| |
|
|
| T |
19591946 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaaaatagtggccatagtgttgttggtaggttgaggtgaagagtaaatga |
19591847 |
T |
|
| Q |
203 |
tcattgg---tttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
| ||||| |||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19591846 |
ttattggtaatttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactg |
19591781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 19345060 - 19344790
Alignment:
| Q |
1 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
19345060 |
catgaaaccaatgaccaattatgtccagtttttcgattaactcccaacttcatcgttgggatcaaagtgtgatcgggataatcaaaactctgccataata |
19344961 |
T |
|
| Q |
101 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaat |
200 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||| | |||||| |
|
|
| T |
19344960 |
aactatttgtcccatttgggtgaaattgttgaagcacaaagttacctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgacgagtaaat |
19344861 |
T |
|
| Q |
201 |
gatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
||| ||||||||||||| || |||||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
19344860 |
gattattggtttcctattttatgattctattttgagcacaccagaataatctagtgatagaactgctgaat |
19344790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 265
Target Start/End: Complemental strand, 19390477 - 19390218
Alignment:
| Q |
6 |
aaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
19390477 |
aaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaagtgtcgtcgggataatcaaaactctgccataataaactc |
19390378 |
T |
|
| Q |
106 |
tttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatca |
205 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||||| ||||||| |||||| |||| ||||||||| ||||||||||||||| ||||||||| | |
|
|
| T |
19390377 |
tttgtaccatttgggtgaaatttttgaagcacaaagttaccggtgtctagcatagttgccatagtgttgtttatgggttgaggtgaagagtaaatgatta |
19390278 |
T |
|
| Q |
206 |
ttggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||| | || ||||||||||| |
|
|
| T |
19390277 |
ttggtttcctattttgagattctattttgagcacaccagtgtagtttaatgataaaactg |
19390218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 19448405 - 19448135
Alignment:
| Q |
1 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| || || |||||||||||||||||||| || | |
|
|
| T |
19448405 |
catgacaccaatgaccaattatgtcctgttttttgattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaaca |
19448306 |
T |
|
| Q |
101 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaat |
200 |
Q |
| |
|
| |||||| |||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
19448305 |
cagtctttgacccattggggtgaaattgttgaagcacaaagttacctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgaagagtaaat |
19448206 |
T |
|
| Q |
201 |
gatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
19448205 |
gattattggtttcctattttgtgattctattttgagcacaccagaataatctagtgatagaactgctgaat |
19448135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 19532671 - 19532941
Alignment:
| Q |
1 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| || || |||||||||||||||||||| || | |
|
|
| T |
19532671 |
catgacaccaatgaccaattatgtcctgttttttgattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaaca |
19532770 |
T |
|
| Q |
101 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaat |
200 |
Q |
| |
|
| |||||| |||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
19532771 |
cagtctttgacccattggggtgaaattgttgaagcacaaagttacctgtgtctaatatagtggccaaagtgttgtttatgggttgaggtgaagagtaaat |
19532870 |
T |
|
| Q |
201 |
gatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
19532871 |
gattattggtttcctattttgtgattctattttgagcacaccagaataatctagtgatagaactgctgaat |
19532941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 19355362 - 19355091
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | ||| ||||| |||||||||||||||| |||| |
|
|
| T |
19355362 |
tgaaaccaatgaccaattatgtcctgtttttcgattaacacctaacttcatcgttgggatcaaactatctgttggatagtcaaaactctgccatagtata |
19355263 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||| ||| || ||||||| |
|
|
| T |
19355262 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacctgtgtctaacatagtggccacagtgtcgttggttggttcaggcaaataataaatga |
19355163 |
T |
|
| Q |
203 |
tcattggt---ttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
| || ||| ||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
19355162 |
taatcggtacattcctattttgaaattctattttgagcacaccagagtagtctagtgatagaactgctgaat |
19355091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 19376502 - 19376236
Alignment:
| Q |
7 |
accaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatactct |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| || || |||||||||||||||||||| || | | ||| |
|
|
| T |
19376502 |
accaatgaccaattatatcctgtttttcgattaacgcctaacttcatcgttgggatcaaaacgtctgatggataatcaaaactctgccacaaaacagtct |
19376403 |
T |
|
| Q |
107 |
ttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcat |
206 |
Q |
| |
|
||| |||||| || |||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||| || |
|
|
| T |
19376402 |
ttgacccattgggatgaaattgttgaagcacaaagttacctgtgtctaatatagtggccaaagtgttgtttattggttgaggtgaagagtaaatgattat |
19376303 |
T |
|
| Q |
207 |
tggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatct |
273 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
19376302 |
tggtttcctattttgtgattctattttgagcacaccagagtagtctagtgatagaactgctgaatct |
19376236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 19410696 - 19410434
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| || || |||||||||||||||||||| || | | |
|
|
| T |
19410696 |
tgaaaccaatgaccaattatgtcctgtttttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacaca |
19410597 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||| ||| || || || ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
19410596 |
ctcattgagccgttgggaagaaattgttgaagcacaaagttaccggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatga |
19410497 |
T |
|
| Q |
203 |
tcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
| ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
19410496 |
ttattggtttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactg |
19410434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 19457715 - 19457453
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| || || |||||||||||||||||||| || | | |
|
|
| T |
19457715 |
tgaaaccaatgaccaattatgtcctgtttttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacaca |
19457616 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||| ||| || || || ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
19457615 |
ctcattgagccgttgggaagaaattgttgaagcacaaagttaccggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatga |
19457516 |
T |
|
| Q |
203 |
tcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
| ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
19457515 |
ttattggtttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactg |
19457453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 19523363 - 19523625
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| || || |||||||||||||||||||| || | | |
|
|
| T |
19523363 |
tgaaaccaatgaccaattatgtcctgtttttcgattaacgcctaacttcatcattgggatcaaaacgtctgatggataatcaaaactctgccacaacaca |
19523462 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||| ||| || || || ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
19523463 |
ctcattgagccgttgggaagaaattgttgaagcacaaagttaccggcgtctaacatagtggccacagtgttgttggtaggttgaggtgaagagtaaatga |
19523562 |
T |
|
| Q |
203 |
tcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
| ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
19523563 |
ttattggtttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactg |
19523625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 19337342 - 19337069
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||| | |||| || | |||| ||||||||||||||||||||||| |
|
|
| T |
19337342 |
tgaaaccaatgaccaattatgtcctgttttacgattaacacctaacttcatcgttggtaacaaagtgtctacgggagaatcaaaactctgccataatata |
19337243 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| |||| | |||||||| ||| ||||||| |
|
|
| T |
19337242 |
ctctttgtcccatttgggtgaagctgttgaagcacgaagttaccggtgtctaacatagtggccacagtgtcgttggttggttgaggcgaataataaatga |
19337143 |
T |
|
| Q |
203 |
tcattggt---ttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatct |
273 |
Q |
| |
|
| |||||| ||||||| |||| ||||||||||||| ||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
19337142 |
taattggtacattcctattttgaaattctattttgagtacaccagagtagtctagtgatagaactgctgaatct |
19337069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 19287605 - 19287338
Alignment:
| Q |
1 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
100 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| ||||| || |||||||| |||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
19287605 |
catgaaaccaacgaccaattatgtccggtttttcggttaacacctaacttcattgttgggatcaaagtggctgtgggataatcaaaactctgccataata |
19287506 |
T |
|
| Q |
101 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaat |
200 |
Q |
| |
|
|| ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||| || ||| | || ||||| |||| |||||| |
|
|
| T |
19287505 |
tattctttgtcccatttgggtgaattttttgaagcacaaagttaccggtgtctaacatagtggcgacagtattattggtcggatgaggcgaagagtaaat |
19287406 |
T |
|
| Q |
201 |
gatcattgg---tttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
||| || || |||||||| |||| ||||||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
19287405 |
gataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactg |
19287338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 19404639 - 19404367
Alignment:
| Q |
1 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
100 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || || || ||||||||||||||||| || | |
|
|
| T |
19404639 |
catgacaccaatgaccaattatgtgctgtttttcgattaactcctaacttcatcgttgggatcaaaacgtctgatgggtaatcaaaactctgccacaaca |
19404540 |
T |
|
| Q |
101 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaat |
200 |
Q |
| |
|
| |||||| |||||| ||||||| |||| |||||||||||||||| |||||||| ||||| |||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
19404539 |
cagtctttgacccattggggtgaaattgtcgaagcacaaagttacctgtgtctaatatagtagccaaagtgttgtttatgggttgaggtgaagaataaat |
19404440 |
T |
|
| Q |
201 |
gatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaatct |
273 |
Q |
| |
|
||| |||||||||||| ||| ||||||||||||||||||| ||||| ||||| |||| ||||| ||||||| |
|
|
| T |
19404439 |
gataattggtttcctactttgtgattctattttgagcacaccggagtagtctagcgatagaactgctgaatct |
19404367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 19173044 - 19173308
Alignment:
| Q |
4 |
gaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatatac |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
19173044 |
gaaaccaatgaccaattatgtccggtttttcggttaacacctaacttcatcgttgggatcaaagtggttatgggataatcaaaactctgccataatatac |
19173143 |
T |
|
| Q |
104 |
tctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgat |
203 |
Q |
| |
|
|||||||||| || |||| || |||| |||||||||||||||| |||||||| |||||||||| || |||| ||||||||||||||| | | ||||| |
|
|
| T |
19173144 |
tctttgtcccgttggggtaaatttgtcgaagcacaaagttacctgtgtctaatatagtggccaaag---tgtttatgggttgaggtgaagagcatatgat |
19173240 |
T |
|
| Q |
204 |
cattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||||||| ||||||||||| | ||||| ||||| |
|
|
| T |
19173241 |
tattggtttcctattttgtgattgtattttgagcacaccagaataatctagtgaaagaactgctgaat |
19173308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 19468792 - 19469060
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||| | |||| || ||||||||||||||||||||| || | | |
|
|
| T |
19468792 |
tgaaaccaatgaccaattatgtcctgttttccgattaacgcctaacttcatcgttggaaccaaagtgtcatcgggataatcaaaactctgccacaacaca |
19468891 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||| ||| ||||| || |||| |||| |||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
19468892 |
ctcattgagccattgggatgaaattgtcgaagcacaaagttacctgtgtctaatatagtggccatagtgttgtttatgggttgaggtgaagagtaaatga |
19468991 |
T |
|
| Q |
203 |
tcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
| ||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19468992 |
ttattggtttcctattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19469060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 19555713 - 19555981
Alignment:
| Q |
3 |
tgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataatata |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||| | |||| || ||||||||||||||||||||| || | | |
|
|
| T |
19555713 |
tgaaaccaatgaccaattatgtcctgttttccgattaacgcctaacttcatcgttggaaccaaagtgtcatcgggataatcaaaactctgccacaacaca |
19555812 |
T |
|
| Q |
103 |
ctctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatga |
202 |
Q |
| |
|
||| ||| ||||| || |||| |||| |||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
19555813 |
ctcattgagccattgggatgaaattgtcgaagcacaaagttacctgtgtctaatatagtggccatagtgttgtttatgggttgaggtgaagagtaaatga |
19555912 |
T |
|
| Q |
203 |
tcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
| ||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19555913 |
ttattggtttcctattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19555981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 107 - 265
Target Start/End: Complemental strand, 19489886 - 19489728
Alignment:
| Q |
107 |
ttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaacatagtggccacagtgttgttgttgggttgaggtgaagtgtaaatgatcat |
206 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| || |
|
|
| T |
19489886 |
ttgtcccatttgggtgaagttgttgaatcaccaagttaccggtgtctaacatagtggccaccgtgttgttggtgggttgagttgacaagtaaatgattat |
19489787 |
T |
|
| Q |
207 |
tggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactg |
265 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
19489786 |
tggtttcctattttgtgattctattttgagcgcaccagagtaggctagtgataaaactg |
19489728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 19468140 - 19468231
Alignment:
| Q |
179 |
tgggttgaggtgaagtgtaaatgatcattggtttcctatcttgacattctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| || ||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19468140 |
tgggttgaggtgaagagtaaatgattattggtttcc-attttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19468231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 19185115 - 19185068
Alignment:
| Q |
224 |
attctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
19185115 |
attctattttgagcacaccagagtagtctagtgatagaactgctgaat |
19185068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 16004341 - 16004306
Alignment:
| Q |
224 |
attctattttgagcacaccagagtaatctagtgata |
259 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16004341 |
attctattttgagcacaccagagtagtctagtgata |
16004306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 19458256 - 19458303
Alignment:
| Q |
224 |
attctattttgagcacaccagagtaatctagtgataaaactgttgaat |
271 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
19458256 |
attctattttgagcacaccagagtagtctaatgatagaactgctgaat |
19458303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 19542957 - 19542803
Alignment:
| Q |
1 |
catgaaaccaatgaccaattatgtcctgtttttcgattaactcccaacttcatcgttgggatcaaaaagtttgtgggataatcaaaactctgccataata |
100 |
Q |
| |
|
|||||||| || |||||||||||||| ||| |||| |||| || ||||||||| |||| ||| || ||| | | ||| |||||||||||||||||| | |
|
|
| T |
19542957 |
catgaaactaaagaccaattatgtccggttattcggttaatacctaacttcatcattggaatccaacagtgtaagagatgatcaaaactctgccataaaa |
19542858 |
T |
|
| Q |
101 |
tactctttgtcccatttgggtgaagttgttgaagcacaaagttacccgtgtctaa |
155 |
Q |
| |
|
||| ||| ||||| ||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
19542857 |
cacttgttgaaccattggggtgaaattgttgaagaacaaagttaccggtgtctaa |
19542803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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