View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_low_54 (Length: 301)

Name: NF16702_low_54
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_low_54
NF16702_low_54
[»] chr7 (1 HSPs)
chr7 (1-301)||(20544748-20545048)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 20544748 - 20545048
Alignment:
Q  1 accttattccaacctatcatcatcatccttaactcttcatcatcaatgtcacttacaggagcttctgtttgagctccaacaatgtctttaacacctgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20544748 accttattccaacctatcatcatcatccttaactcttcatcatcaatgtcacttacaggagcttctgtttgagctccaacaatgtctttaacacctgttt 20544847  T
Q  101 tctcatgtgggccattgttaaaccttcccacaaccaatcttagaggttttagaacaaaacctgtcactgttagactgcttagttctttagctttacctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20544848 tctcatgtgggccattgttaaaccttcccacaaccaatcttagaggttttagaacaaaacctgtcactgttagactgcttagttctttagctttacctca 20544947  T
Q  201 aaggttgtttgcacattggaatacaaacggacacgtttctcaccccttcaggtaactaactaactaacttctcatttatatgttgatgaatatgattgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20544948 aaggttgtttgcacattggaatacaaacggacacgtttctcacctcttcaggtaactaactaactaacttctcatttatatgttgatgaatatgattgtt 20545047  T
Q  301 t 301  Q
    |    
T  20545048 t 20545048  T

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