View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_55 (Length: 301)
Name: NF16702_low_55
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_55 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 41 - 301
Target Start/End: Original strand, 195042 - 195302
Alignment:
| Q |
41 |
ctatctacaaaattatcaccaccaccaagggttttaccaccctttctgctgttatttctttctctaaaactactaacaacttgttgttctaaatcataag |
140 |
Q |
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| T |
195042 |
ctatctacaaaattatcaccaccaccaagggttttaccaccctttctgctgttatttctttctctaatactactaacaacttgttgttctaaatcataag |
195141 |
T |
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| Q |
141 |
taactcctctctctacaacactcccaccacggccaccgttcaaattcgacttaattatgttatctttttctctaatactaccaacctcatcagattttga |
240 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
195142 |
taactcctctctcaacaacactcccacctcggccaccgttcaaattcgacttaattatgttatctttttctctaatactactaacctcatcagattttga |
195241 |
T |
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| Q |
241 |
gtctaaactatgactccggcgcttcgaaccatcagatttctgcttcctttcattcctaaac |
301 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
195242 |
gtctaaactacgactccggcgcttcgaaccatcagatttctgcttcctttcattcctaaac |
195302 |
T |
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