View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_56 (Length: 301)
Name: NF16702_low_56
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 68 - 283
Target Start/End: Original strand, 47669506 - 47669720
Alignment:
| Q |
68 |
aaagagtggtgctatatagtaaaaaatgttattgtacgaaaattcacagaaatgtgtatttgaggcacaacacttgcaattttatataatagaaaactaa |
167 |
Q |
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| T |
47669506 |
aaagagtggtgctatataatatggaatattattgtacgaaaattcacggaaatgtgtatttgagacacaacacttgcaattttatataatagaaagctaa |
47669605 |
T |
|
| Q |
168 |
---cgtagcactcctttacggaatacacgggctgattaggggtagaattaaattttattaacaaattatactataatagcctcctttaaatgaatgaata |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
47669606 |
taacgtagcactcctttacggaatacacgggctgattaggggcagaattaaattttattaaaaaattatactataatagtctccttta----aatgaata |
47669701 |
T |
|
| Q |
265 |
catgggtggttgttaacaa |
283 |
Q |
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||||||||||||||||||| |
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| T |
47669702 |
catgggtggttgttaacaa |
47669720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 69 - 283
Target Start/End: Complemental strand, 37511878 - 37511665
Alignment:
| Q |
69 |
aagagtggtgctatatagtaaaaaatgttattgtacgaaaattcacagaaatgtgtatttgaggcacaacacttgcaattttatataatagaaaactaa- |
167 |
Q |
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| T |
37511878 |
aagagtggtgctatatagtacggaatgttattttacgaaaattcacggaaatgtctatttgagacacaacacttgcaattttatataatagaaagctaat |
37511779 |
T |
|
| Q |
168 |
--cgtagcactcctttacggaatacacgggctgattaggggtagaattaaattttattaacaaattatactataatagcctcctttaaatgaatgaatac |
265 |
Q |
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| T |
37511778 |
aacgaagcactcctttacggaatacacgggctgattaggggcagaattaaattttattaaaaaattatactataatagtctcctttaaat----gaatac |
37511683 |
T |
|
| Q |
266 |
atgggtggttgttaacaa |
283 |
Q |
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|||||||||||||||||| |
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| T |
37511682 |
atgggtggttgttaacaa |
37511665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 72 - 259
Target Start/End: Complemental strand, 23058909 - 23058718
Alignment:
| Q |
72 |
agtggtgctatatagtaaaaaatgttattgtacgaaaattcacagaaatgtgtatttgaggcacaacacttgcaattttatataatagaaa----actaa |
167 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| | ||| |
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| T |
23058909 |
agtggtgctatatagtacggaatgttattgtacgaaaattcacggatatgtgtatttgagacacaacacttgcaattttatataatagaaaagctaataa |
23058810 |
T |
|
| Q |
168 |
cgtagcactcctttacggaatacacgggctgattaggggtagaattaaattttattaacaaattatactataatagcctcctttaaatgaat |
259 |
Q |
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| T |
23058809 |
tgcagcactcctttgcggaatacacaggctgattagggacagaattaaattttattaaaaaattatactataatagtcttctttaaatgaat |
23058718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 45357292 - 45357369
Alignment:
| Q |
71 |
gagtggtgctatatagtaaaaaatgtta-ttgtacgaaaattcacagaaatgtgtatttgaggcacaacacttgcaat |
147 |
Q |
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||||||| |||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
45357292 |
gagtggtactatatagtacggaatgttaattgtacgaaaattcacggaaatgtgtatttgagacacaacacttgcaat |
45357369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 45357367 - 45357424
Alignment:
| Q |
186 |
aatacacgggctgattaggggtagaattaaattttattaacaaattatactataatag |
243 |
Q |
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| T |
45357367 |
aatacacgggctgattaggggcagaattaaattttattaaaaaattatactaaaatag |
45357424 |
T |
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