View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_59 (Length: 289)
Name: NF16702_low_59
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_59 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 85 - 289
Target Start/End: Complemental strand, 42667614 - 42667410
Alignment:
| Q |
85 |
catcaaggacattgaagtacacacgtctttgaaaggaaagaacaagaagaagcaaggatcagaaacgcatcaatctgaaaagattgagaaaacaaaaaat |
184 |
Q |
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| T |
42667614 |
catcaaggacattgaagtacacacgtctttgaaaggaaagaacaagaagaagcaaggatcagaaacgcatcaatctgaaaagattgagaaaacaaaaaat |
42667515 |
T |
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| Q |
185 |
aacactgctgcagagagaaagaataaaaagttaattgtaacgaaggatgagaaaatgcaacaatctttgaaaggaaagaagaagcatagacataaaagcg |
284 |
Q |
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| T |
42667514 |
aacactgctgcagagagaaagaataaaaagttaattgtaacgaaggatgagaaaatgcaacaatctttgaaaggaaagaagaagcatagacataaaagcg |
42667415 |
T |
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| Q |
285 |
ttgaa |
289 |
Q |
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||||| |
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| T |
42667414 |
ttgaa |
42667410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 42667698 - 42667642
Alignment:
| Q |
1 |
gtggcgatttagcgatgatactcatgttaaccgttatcgtggattggacttaaactt |
57 |
Q |
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| T |
42667698 |
gtggcgatttagcgatgatactcatgttaaccgttatcgtggattggacttaaactt |
42667642 |
T |
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