View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_60 (Length: 282)
Name: NF16702_low_60
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 23149519 - 23149320
Alignment:
| Q |
1 |
tatcaaggccataatcttggtaagaacaataacctaacctcttctaaataaatttaagaaaaacttgattaatacagtagaatttaaatggttatttaga |
100 |
Q |
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| T |
23149519 |
tatcaaggccataatcttggtaagaacaataacctaacctcttctaaataactttaagaaaaacttgattaatacagtagaatttaaatggttatttaga |
23149420 |
T |
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| Q |
101 |
agatgcccttgaattaatttatctcacatatgagatctttaaactgtgaaatacttccaatgtgtcatattaagtttcctcaaggaaatatatttctttc |
200 |
Q |
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| T |
23149419 |
agatgcccttgaattaatttatctcacatatgagatctttaaactgtgaaatacttccaatgtgtcatattaagtttcctcaaggaaatatatttctttc |
23149320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 45598364 - 45598290
Alignment:
| Q |
194 |
ttctttcaataaccattacttgtttcttctttgttcatgtgcacgtatcaacttctccaactgatcctaataact |
268 |
Q |
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| T |
45598364 |
ttctttcaataaccattacttgtttcttctttgttcatgtgcacgtatcaacttctccaactgatcctaataact |
45598290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 19398307 - 19398270
Alignment:
| Q |
227 |
ttcatgtgcacgtatcaacttctccaactgatcctaat |
264 |
Q |
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| T |
19398307 |
ttcatgtgcacgtatcaacttctccaactgatcctaat |
19398270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 42794510 - 42794473
Alignment:
| Q |
227 |
ttcatgtgcacgtatcaacttctccaactgatcctaat |
264 |
Q |
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| T |
42794510 |
ttcatgtgcacatatcaacttctccaactgatcctaat |
42794473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 13510343 - 13510306
Alignment:
| Q |
227 |
ttcatgtgcacgtatcaacttctccaactgatcctaat |
264 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
13510343 |
ttcatgtgcacgtatcaacttctccaaccgatcctaat |
13510306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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