View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_65 (Length: 273)
Name: NF16702_low_65
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 43230686 - 43230938
Alignment:
| Q |
13 |
gagatgaatgagttgttgtcagagcgacatgtgaaggaagaatgataaaattgatggttgagcatgagagtattgattaatgcttttccagcaagtttcc |
112 |
Q |
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| T |
43230686 |
gagatgaatgagttgttgtcggagcgacatgtgaaggaagaatgataaagttgatggttgagcatgagagtattgattaatgcttttccagcaagtttcc |
43230785 |
T |
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| Q |
113 |
cacgtttgagaattaaattgaggtctaccattgttttgctcttggctatgccttttcttataatgaacaataatacacgtaccatgttccatagcttctt |
212 |
Q |
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| T |
43230786 |
cacgtttgagaatcaaattgaggtgtaccattgttttgctcttggctatgccttttcttataatgaacaataatacacgtaccatgttccatagcttctt |
43230885 |
T |
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| Q |
213 |
tgccaccacgccttgccttgcttcaatttccattttctgagactatgatgatg |
265 |
Q |
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| T |
43230886 |
tgccaccacgccttgccttgcttcaatttccattttctgagactacgatgatg |
43230938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 43235173 - 43235240
Alignment:
| Q |
181 |
aataatacacgtaccatgttccatagcttctttgccaccacgccttgccttgcttcaatttccatttt |
248 |
Q |
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|||||||||| |||||||||||||||||||||||| || | | ||||||||||| |||||| |||||| |
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| T |
43235173 |
aataatacacttaccatgttccatagcttctttgctacgatgtcttgccttgctccaattttcatttt |
43235240 |
T |
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