View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_70 (Length: 254)
Name: NF16702_low_70
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_70 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 42169438 - 42169271
Alignment:
| Q |
7 |
tatggtgcgtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttctaatgacatctttgacaactctgaagc |
106 |
Q |
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| T |
42169438 |
tatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttctaatgacatctttgacaaatctgaagc |
42169339 |
T |
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| Q |
107 |
taactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactctgcc |
174 |
Q |
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| T |
42169338 |
taactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactctgcc |
42169271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 42169253 - 42169212
Alignment:
| Q |
192 |
tagaaacatcattcactagcactcacttatcaaaggcgtgtc |
233 |
Q |
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| T |
42169253 |
tagaaacatcattcactattactcacttatgaaaggcgtgtc |
42169212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 21686047 - 21686150
Alignment:
| Q |
71 |
agcttcttctaatgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactc |
170 |
Q |
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| T |
21686047 |
agcttcttctaaagacatctttgacaactctgaagctaactgcttctcaattaactcagccatgttcactatacctgcttgcctcatattacatccactc |
21686146 |
T |
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| Q |
171 |
tgcc |
174 |
Q |
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|||| |
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| T |
21686147 |
tgcc |
21686150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 333944 - 333841
Alignment:
| Q |
15 |
gtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttctaatgacatctttgacaactctgaagctaactgct |
114 |
Q |
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||||||||||| | ||||||||||||||| || ||||| ||||||||||| || |||||||||||| |||||| || ||||||||||| ||||||| |
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| T |
333944 |
gtttcagctatgctcatcatagtaagatagtgactgaatgcacgagcaagtgtttgagcttcttctaagttcatcttggataactctgaagccaactgct |
333845 |
T |
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| Q |
115 |
tctc |
118 |
Q |
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|||| |
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| T |
333844 |
tctc |
333841 |
T |
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