View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_75 (Length: 249)
Name: NF16702_low_75
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 4002224 - 4002005
Alignment:
| Q |
15 |
gaaaggagaatcataacccgcatgtgccttcattttattgatttgagtgactatctaataattgaaaatataaaatagagattgacaatgaaacctgatt |
114 |
Q |
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| T |
4002224 |
gaaaggagaatcataacccgcatgtgccttcattttattgatttgagtgactatctaataattgaaaatataaaatagagattgacaatgaaacctgatt |
4002125 |
T |
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| Q |
115 |
cattatataaactcaagtgatgagaattgacaaactgtataatgtctaggcataagaactatacttttttctctaaaccatgaaattctgaaaaagaatc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |
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| T |
4002124 |
cattatataaactcaagtgatgagaattgacaaactgtataatgtctaggcataagaaccatacttttttctctaaaccatgaaattatgagaaagaatc |
4002025 |
T |
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| Q |
215 |
ttttaacatccactaccttc |
234 |
Q |
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|||||||||||||||||||| |
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| T |
4002024 |
ttttaacatccactaccttc |
4002005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 32724968 - 32724846
Alignment:
| Q |
112 |
attcattatataaactcaagtgatgagaattgacaaactgtataatgtctaggcataagaactatacttttttctctaaaccatgaaattctgaaaaaga |
211 |
Q |
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||||||| ||||||||||||||||| ||||| ||||| ||||||||||| | ||||||||| |||||||||||||| ||||||||||| |||| ||||| |
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| T |
32724968 |
attcattttataaactcaagtgatgcgaattcacaaatcgtataatgtcttgacataagaaccatacttttttctctgaaccatgaaatgctgagaaaga |
32724869 |
T |
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| Q |
212 |
atcttttaacatccactaccttc |
234 |
Q |
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||||||||||||||| ||||||| |
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| T |
32724868 |
atcttttaacatccattaccttc |
32724846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 32723543 - 32723455
Alignment:
| Q |
112 |
attcattatataaactcaagtgatgagaattgacaaactgtataatgtctaggcataagaactatacttttttctctaaaccatgaaat |
200 |
Q |
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| T |
32723543 |
attcattttataaattcaagtgatgagaattaagaaatcgtataaagtctaggcatgagaactgtactttttcctctaaaccattaaat |
32723455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 32723452 - 32723393
Alignment:
| Q |
175 |
atacttttttctctaaaccatgaaattctgaaaaagaatcttttaacatccactaccttc |
234 |
Q |
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| T |
32723452 |
atactttttcatctgaaccatgaaatgctgataaagaatcttgtaacatccactaccttc |
32723393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 15720269 - 15720181
Alignment:
| Q |
112 |
attcattatataaactcaagtgatgagaattgacaaactgtataatgtctaggcataagaactatacttttttctctaaaccatgaaat |
200 |
Q |
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||||||| |||||| |||||||||||||||| | ||| ||||||| |||||||||| |||||| |||||||| ||||||||||| |||| |
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| T |
15720269 |
attcattttataaattcaagtgatgagaattcagaaattgtataaagtctaggcatgagaactgtactttttcctctaaaccattaaat |
15720181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 15720178 - 15720119
Alignment:
| Q |
175 |
atacttttttctctaaaccatgaaattctgaaaaagaatcttttaacatccactaccttc |
234 |
Q |
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||||||||| ||| ||||||||||| |||| |||||||||| ||||||||||||||||| |
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| T |
15720178 |
atactttttcatctgaaccatgaaatactgagaaagaatcttgtaacatccactaccttc |
15720119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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