View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_77 (Length: 241)
Name: NF16702_low_77
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_77 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 27112469 - 27112694
Alignment:
| Q |
16 |
ttaatcacattttttctttatcttctaggctcacaaattcagagtttttatctgnnnnnnncccttcacttactgctaatataagtttttggattactgt |
115 |
Q |
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| T |
27112469 |
ttaatcacattttttctttatcttctaggctcacaaattcagagtttttatctgtttttttcccttcacttactgctaatataagtttttggattactgt |
27112568 |
T |
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| Q |
116 |
ggctcttaatattcctgattttactagatatgcaaaaagtcaaaaagatcaagttataggtcaaattgggttacctatttttatggggctatttacattt |
215 |
Q |
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| T |
27112569 |
ggctcttaatattcctgattttactagatatgcaaagagtcaaaaagatcaagttataggtcaaattgggttacctatttttatggggctatttacattt |
27112668 |
T |
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| Q |
216 |
gttggtttagtagttacttcatctac |
241 |
Q |
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| T |
27112669 |
gttggtctagttgttacttcatctac |
27112694 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 41611310 - 41611149
Alignment:
| Q |
77 |
cccttcacttactgctaatataagtttttggattactgtggctcttaatattcctgattttactagatatgcaaaaagtcaaaaagatcaagttataggt |
176 |
Q |
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|||||| || ||||||||||||||||||||| | || | |||||||| || ||||||||||| |||||||| || || ||||| |||||| |||| ||| |
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| T |
41611310 |
cccttctctaactgctaatataagtttttgggctgctctagctcttaacatacctgattttacaagatatgctaagagccaaaatgatcaaattattggt |
41611211 |
T |
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| Q |
177 |
caaattgggttacctatttttatggggctatttacatttgttggtttagtagttacttcatc |
238 |
Q |
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| T |
41611210 |
caagctggtcttccaatttttatgggagcattcacatttgttggtatagtagtaacatcatc |
41611149 |
T |
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