View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16702_low_79 (Length: 237)

Name: NF16702_low_79
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16702_low_79
NF16702_low_79
[»] chr3 (8 HSPs)
chr3 (1-221)||(23149110-23149330)
chr3 (141-220)||(23024625-23024704)
chr3 (141-210)||(23140409-23140478)
chr3 (147-218)||(23036525-23036596)
chr3 (149-221)||(23146272-23146344)
chr3 (147-201)||(23033071-23033125)
chr3 (147-210)||(23039404-23039467)
chr3 (147-210)||(23017425-23017488)
[»] chr6 (1 HSPs)
chr6 (147-218)||(21780168-21780239)
[»] scaffold0554 (1 HSPs)
scaffold0554 (150-206)||(6331-6387)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23149330 - 23149110
Alignment:
Q  1 atatttctttctcaaattatttgtcagtctagaatagtgaacaagtttttattacttttattcatttaaattctacatagttcttgtagcattgaatggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23149330 atatttctttctcaaattatttgtcagtctagaatagtgaacaagtttttattacttttattcatttaaattctacgtagttcttgtagcattgaatggt 23149231  T
Q  101 gtctctgcaggttctcttttaactatctctgtatgtatccttattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccattgattggg 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23149230 gtctctgcaggttctcttttaactatctctgtatgcatccttattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattggg 23149131  T
Q  201 caatggtagagatggtaaagg 221  Q
    |||||||||||||||||||||    
T  23149130 caatggtagagatggtaaagg 23149110  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 23024704 - 23024625
Alignment:
Q  141 ttattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggcaatggtagagatggtaaag 220  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  23024704 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaag 23024625  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 23140478 - 23140409
Alignment:
Q  141 ttattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggcaatggtaga 210  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  23140478 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtaga 23140409  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 23036596 - 23036525
Alignment:
Q  147 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggcaatggtagagatggtaa 218  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||    
T  23036596 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaa 23036525  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 23146344 - 23146272
Alignment:
Q  149 caggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggcaatggtagagatggtaaagg 221  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||    
T  23146344 caggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaagg 23146272  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 23033125 - 23033071
Alignment:
Q  147 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23033125 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggc 23033071  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 23039467 - 23039404
Alignment:
Q  147 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggcaatggtaga 210  Q
    |||||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||    
T  23039467 ttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtaga 23039404  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 23017488 - 23017425
Alignment:
Q  147 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggcaatggtaga 210  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||  |||||||||||| ||||    
T  23017488 ttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgataga 23017425  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 21780239 - 21780168
Alignment:
Q  147 ttcaggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggcaatggtagagatggtaa 218  Q
    |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||    
T  21780239 ttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaa 21780168  T

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Target: scaffold0554 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 6331 - 6387
Alignment:
Q  150 aggacatttttggtgctggaggcgagacatcagcaagcaccattgattgggcaatgg 206  Q
    |||||||||||||||||||||| || |||||||||| |||||| |||||||||||||    
T  6331 aggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatgg 6387  T

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