View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_8 (Length: 548)
Name: NF16702_low_8
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 538
Target Start/End: Original strand, 52872026 - 52872547
Alignment:
| Q |
17 |
gaatataataacggaaaattgtatacacaagcctcgttataaataaaagtatacacagcatcacagagcatcttaaactgtctgattaaaaaatgtatgc |
116 |
Q |
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| T |
52872026 |
gaatataataatggaaaattgtatacacaagcctcgttataaataaaagtatacacagcatcacagagcatcttaaactgtctgattaaaaaatgtatgc |
52872125 |
T |
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| Q |
117 |
taacttatcataggatgataaaaatgggacacaatagtcttacctgacaattttctgaggtgtaaaattagattcccatagatggttcagaactgctccc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52872126 |
taacttatcataggatgataaaaatgggacacaatagtcttacctgacaattttctgaggtgtaaaattagattcccatagatggttcagaactgctccc |
52872225 |
T |
|
| Q |
217 |
ttccatgttgctcgaaacttagtaacaaactcagtctttggatctgtttcttctgtaaacccggcaggtcccaccaaaattaagtgttgtacatgctgag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52872226 |
ttccatgttgctcgaaacttagtaacaaactcagtctttggatctgtttcttctgtaaacccggcaggtcccaccaaaattaagtgttgtacgtgctgag |
52872325 |
T |
|
| Q |
317 |
ggtgctatacgaaaatatgcatcaagccgattgggaaaagaaagttaagaagtcggtatcatttatcattttaatgaaatgcaagaatggaatacttacc |
416 |
Q |
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| T |
52872326 |
ggtgctatacgaaaatatgcatcaggccgattgggaaaagaaagttaagaagtcggtatcatttatcattttaatgaaatgcaagaatggaatacttacc |
52872425 |
T |
|
| Q |
417 |
ttgagcgcgtatttggaagcaacataaccaccaaaagaatgtccaagcagtatgaaattggtaagatttttggcttttctccattcctcgaaagaatcaa |
516 |
Q |
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| T |
52872426 |
ttgagcgcgtatttggaagcaacataaccaccaaaagaatgtccaagcagtatgaaattggtaagatttttggcttttctccattcctcgaaagaatcaa |
52872525 |
T |
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| Q |
517 |
tgaaccatgccacaggttctgc |
538 |
Q |
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| T |
52872526 |
tgaaccatgcctcagtttctgc |
52872547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 414 - 523
Target Start/End: Original strand, 7471401 - 7471510
Alignment:
| Q |
414 |
accttgagcgcgtatttggaagcaacataaccaccaaaagaatgtccaagcagtatgaaattggtaagatttttggcttttctccattcctcgaaagaat |
513 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||| || || ||||| |||||| | || ||||||||||| ||||||||||| ||||||| |
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| T |
7471401 |
accttaagcgcgtatttggaagcaatataaccaccaaaagaatgccctagaagtataaaattgctcaggtttttggctttcctccattcctcaaaagaat |
7471500 |
T |
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| Q |
514 |
caatgaacca |
523 |
Q |
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| T |
7471501 |
caatgaacca |
7471510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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