View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_80 (Length: 237)
Name: NF16702_low_80
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38694354 - 38694135
Alignment:
| Q |
1 |
ttgttccttccgcattaattagagccaacggcaaagatgcagcacttaggaatctgtcacatgctcgcgagaaaatgagcaaaactaaggttacttgggc |
100 |
Q |
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| T |
38694354 |
ttgttccttccgcattaattagagccaacagcaaagatgca---cttaggaatctgtcacatgctcgcgagaaaatgagcaaaactaaggttacttaggc |
38694258 |
T |
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| Q |
101 |
tcccatccgacttcctggccagttcttgtgttgtctaatctcttaccaagacggccatcagtcactgtaaaggaaaacgataaaatgcaacaatgatctt |
200 |
Q |
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| T |
38694257 |
tcccagccgacttcctggcgagttcttgtgttgtctaatctcttaccaagacggccatcagtcactggaaaggaaaacgataaaatgcaacaatgatctt |
38694158 |
T |
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| Q |
201 |
agaatcatataagggaataattg |
223 |
Q |
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||||||||| ||||||||||||| |
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| T |
38694157 |
agaatcatacaagggaataattg |
38694135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 38873849 - 38874052
Alignment:
| Q |
1 |
ttgttccttccgcattaattagagccaacggcaaagatgcagcacttaggaatctgtcacatgctcgcgagaaaatgagcaaaactaaggttacttgggc |
100 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| |
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| T |
38873849 |
ttgttccttccacattaattagagccaacagcaaagatgca---cttaggaatctgtcacatgctcgcgagaaaatgagcaaaactagggt-actgaggc |
38873944 |
T |
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| Q |
101 |
tcccatccgacttcctggccagttcttgtgttgtctaatctcttaccaagacggccatcagtcactgtaaaggaaaacgataaaatgcaacaatgatctt |
200 |
Q |
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| T |
38873945 |
tcccagccgacttcctgtcgagttcttgtgttgtttaatctcttaccaagagggccatcagtcactggaaaagtaaa-gataaaatgcaacaatgatctc |
38874043 |
T |
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| Q |
201 |
agaatcata |
209 |
Q |
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| T |
38874044 |
agaatcata |
38874052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9820289 - 9820364
Alignment:
| Q |
1 |
ttgttccttccgcattaattagagccaacggcaaagatgcagcacttaggaatctgtcacatgctcgcgagaaaatgag |
79 |
Q |
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|||||||||||| |||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
9820289 |
ttgttccttccgtattaattagagccaacagcatagataca---cttaggaatctgtcacatgctcgcgagaaaatgag |
9820364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 9820365 - 9820418
Alignment:
| Q |
153 |
ggccatcagtcactgtaaaggaaaacgataaaatgcaacaatgatcttagaatca |
207 |
Q |
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| T |
9820365 |
ggccatcagtcactggaaaagcaaa-gataaaatgcaacaatgatcttagaatca |
9820418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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