View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16702_low_9 (Length: 546)
Name: NF16702_low_9
Description: NF16702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16702_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 22 - 505
Target Start/End: Original strand, 38256024 - 38256507
Alignment:
| Q |
22 |
gagagagaagaaacaagttgagcaaattgtagctttcaagttggagagatatggtaccttagacatcatgttcagcaatgctggtaacgctggtccttta |
121 |
Q |
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| T |
38256024 |
gagagaggagaaacaagttgaggaaattgttgctttcacgttggagagatatggtaccttagacatcatgttcagcaatgctggtaacgctggtccttta |
38256123 |
T |
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| Q |
122 |
tctagcatactagaatttgacctaaatgaatttgacaacaccatggctgtgaacgttcatggtgcagctgcaactatcaagcatgctgcacgtgtaatgg |
221 |
Q |
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| T |
38256124 |
tctagcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatgg |
38256223 |
T |
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| Q |
222 |
tggaaagaaaaatacgtggatcaataatttgcactgccagtgtagctggttttgttggtggatgtgcaggacatgattatacagcatcaaaacatggtct |
321 |
Q |
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| T |
38256224 |
tggaaagaaaaatacgaggatcaataatttgcacagccagtgtagctggttttgttggtagatgtgcaggacatgattatacagcatcaaaacatggtct |
38256323 |
T |
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| Q |
322 |
tataggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtaga |
421 |
Q |
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| T |
38256324 |
tataggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtaga |
38256423 |
T |
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| Q |
422 |
gcactggacatggtgccgagtgaagttgaagctgttggccttgattatgctaatttgcagggaattacattgaaggctgctcat |
505 |
Q |
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| T |
38256424 |
gcactggacatggtgccgagtgaagttgaagctgttggccttgattatgctaatttgcagggaattacattgaaggctgctcat |
38256507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 144 - 505
Target Start/End: Original strand, 45152327 - 45152688
Alignment:
| Q |
144 |
taaatgaatttgacaacaccatggctgtgaacgttcatggtgcagctgcaactatcaagcatgctgcacgtgtaatggtggaaagaaaaatacgtggatc |
243 |
Q |
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| T |
45152327 |
taaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaagaaaaattcgtggatc |
45152426 |
T |
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| Q |
244 |
aataatttgcactgccagtgtagctggttttgttggtggatgtgcaggacatgattatacagcatcaaaacatggtcttataggccttgttaggtcagca |
343 |
Q |
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| T |
45152427 |
cataatttgcacggctagtgtggctggctttgttgctggatgtgcaggacatgattatacaacatccaaacatggtcttataggccttgttcgctcaacg |
45152526 |
T |
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| Q |
344 |
tgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtagagcactggacatggtgccgagtg |
443 |
Q |
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| T |
45152527 |
tgcagtgagcttggagcttatggaataagagttaattcaatttcaccttctggtgttgccacacctcttttatgtagagcactgaacaaggatgtgagtg |
45152626 |
T |
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| Q |
444 |
aagttgaagctgttggccttgattatgctaatttgcagggaattacattgaaggctgctcat |
505 |
Q |
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| T |
45152627 |
aagttgaagctattgggaatgattctgctaatttgaaaggaattacactaaaggctggtcat |
45152688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 125 - 454
Target Start/End: Original strand, 45141663 - 45141992
Alignment:
| Q |
125 |
agcatactagaatttgacctaaatgaatttgacaacaccatggctgtgaacgttcatggtgcagctgcaactatcaagcatgctgcacgtgtaatggtgg |
224 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| | || |||| ||| || ||| |||||||||| ||||||||| | ||||||| |
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| T |
45141663 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
45141762 |
T |
|
| Q |
225 |
aaagaaaaatacgtggatcaataatttgcactgccagtgtagctggttttgttggtggatgtgcaggacatgattatacagcatcaaaacatggtcttat |
324 |
Q |
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| T |
45141763 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggaaatcgtggccatgattatgttacatccaaacatggtctctt |
45141862 |
T |
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| Q |
325 |
aggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtagagca |
424 |
Q |
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| T |
45141863 |
aggacttgtacgttcaacgtgtggtgagcttggagcttacggaattagagtcaattcaatctcaccgtatggtgttgccacgcctcttgcatgtagagca |
45141962 |
T |
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| Q |
425 |
ctggacatggtgccgagtgaagttgaagct |
454 |
Q |
| |
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||| | |||| | |||| ||||||||||| |
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| T |
45141963 |
ctgaatatggagatgagtaaagttgaagct |
45141992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 45152210 - 45152283
Alignment:
| Q |
32 |
aaacaagttgagcaaattgtagctttcaagttggagagatatggtaccttagacatcatgttcagcaatgctgg |
105 |
Q |
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|||||||||||| ||| |||||||| ||||| | |||||| ||||||||||||||||||||||||||||| |
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| T |
45152210 |
aaacaagttgaggaaaccgtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctgg |
45152283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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