View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_high_1 (Length: 853)
Name: NF16703_high_1
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 75 - 836
Target Start/End: Original strand, 11173314 - 11174065
Alignment:
| Q |
75 |
tagaaattttcgtatactatcttttattaaatagaaatagcttaaacataagcatgttacctgaatttgatacgtctaagctcgttgttcccatcaggat |
174 |
Q |
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| T |
11173314 |
tagaaattttcgtatactatcttttattatatagaaatagcttaaacataagcatgttacctgaatttgatacgtctaagctcgttgttcccatcaggat |
11173413 |
T |
|
| Q |
175 |
actgcctgactgtgacaaatattccaggctcaacttgctcaatccattctgagtcagggtcactagagttgctgaaggaaatttcattcattgaagaaga |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
11173414 |
actgcctgactgtgacaaatattccaggctcaacttgctcaatccattctgagtcagggtcactagaattgctgaaggaaatttcattcatagaagaaga |
11173513 |
T |
|
| Q |
275 |
ccttaatgctgcatgcatgttttggttgctactgcttccctcacccatagtgaatcctgaaggattaaagtactgattccccaccattggatcattgttt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173514 |
ccttaatgctgcatgcatgttttggttgctactgcttccctcacccatagtgaatcctgaaggattaaagtactgattccccaccattggatcattgttt |
11173613 |
T |
|
| Q |
375 |
tcccaagcagccacattgcttccacttccagtttcatgcattgagtaagaagcttctctttgctgttcaaaggaaacaatctaataattagatattaaga |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
11173614 |
tcccaagcagccacattgcttccacttccagtttcatgcattgagtaagaagcttctctttgcttttcaaaggaaacaatgtaataattagatattaaga |
11173713 |
T |
|
| Q |
475 |
gtcttgaaatcatatatgaatgttataaattaaagtttacctcatcctcagatggtagagcagtgctaagagcttggctattgaaactccggacattata |
574 |
Q |
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| T |
11173714 |
gtcttgaaatcatatatgaatgttaaaaattaaagtttacctcatcctcagatggtagagcagtgctaagagcttggctattgaaactccggacattata |
11173813 |
T |
|
| Q |
575 |
aagctccctgagtctgtcaaaattctcaccccaccagactctagcttgccacttatcaaagatttctcgacttcacatttaaatattaagcaataagtat |
674 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
11173814 |
aagctccctgagtctgtcaaaattctcaccccaccatactctagcttgccacttatcaaagatttcgcgacttcacatttaaatgttaagcaataagtat |
11173913 |
T |
|
| Q |
675 |
tgttacaactaaattatgagacgtaaactaaacctacgtagcaccgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacaca |
774 |
Q |
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| T |
11173914 |
tgttacaactaaattatgagacgtaaactaaacctacgtagcactgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacaca |
11174013 |
T |
|
| Q |
775 |
tatggttacattcagttacatctatttatcaaatcattacgagtgtcaacgtgtcagtgttg |
836 |
Q |
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||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11174014 |
tat----------agttacagcaatttatcaaatcattacgagtgtcaacgtgtcagtgttg |
11174065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 781
Target Start/End: Original strand, 6213790 - 6213865
Alignment:
| Q |
706 |
acctacgtagcaccgacacttcaaattgaagacgtgtttggtatctgataccaatacgacactgacacatatggtt |
781 |
Q |
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| T |
6213790 |
acctatgtagctccgacacttcacattgaaggcttgtttgttgtctgacaccaacacgacactgacacatatggtt |
6213865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 743
Target Start/End: Original strand, 4628293 - 4628324
Alignment:
| Q |
712 |
gtagcaccgacacttcaaattgaagacgtgtt |
743 |
Q |
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| T |
4628293 |
gtagcaccgacacttcaaattgaagacgtgtt |
4628324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 743
Target Start/End: Complemental strand, 10794645 - 10794610
Alignment:
| Q |
708 |
ctacgtagcaccgacacttcaaattgaagacgtgtt |
743 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
10794645 |
ctacgtagcaccgacacttcatattgaagacgtgtt |
10794610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 755 - 836
Target Start/End: Complemental strand, 43328533 - 43328452
Alignment:
| Q |
755 |
accaatacgacactgacacatatggttacattcagttacatctatttatcaaatcattacgagtgtcaacgtgtcagtgttg |
836 |
Q |
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||||| |||||| |||||||| |||||||||| | ||| || ||| |||||| |||| ||||||||||||||||||||| |
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| T |
43328533 |
accaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgttg |
43328452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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