View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16703_high_11 (Length: 563)
Name: NF16703_high_11
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 7 - 550
Target Start/End: Original strand, 7287678 - 7288219
Alignment:
| Q |
7 |
cagaggaagtctgttgttcccaaaacatgaattgtttcaatacgttttgtgtctactaccggcatttgtggtatttgtcacaaaacttattgtgcttaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7287678 |
cagaggaagtctgttgttcccaaaacatgaattgtttcaatacgttttgtgtgtactgctggcatttgtggtatttgtcacaaaacttattgtgcttaat |
7287777 |
T |
|
| Q |
107 |
atatacaattaagatttttgtatctattttaaaataggctaaattcaacaatttcattgtgtaccatgtaggatgatatctacaatgatacgagtcttaa |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7287778 |
atatacaattaaggtttttgtatctattttaaaataggctaaattcaacaatttcattatgtaccatgtaagatgatatctacaatgatacgagtcttaa |
7287877 |
T |
|
| Q |
207 |
ggatttggttgtaaagtattgttctcgttggatgcctctttaccataaactcaagtttgtgagtaaaattaatttatttggtacataaatacgactgtga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7287878 |
ggatttggttgtaaagtattgttctcgttggatgcctctttaccataaactcaagtttgtgagtaaaattaatttatttggtacataaatacgactgtga |
7287977 |
T |
|
| Q |
307 |
aaaagttgattttaacacttgaatttataaacacttgattttatgaatgttgacattgaaag-ggggttatttaccatcttgatactcattgctctatgg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7287978 |
aaaagttgattttaacacttgaatttataaacacttgattttatgaatgttgacattgaaagaggggttatttaccatcttgatactcactgctctatgg |
7288077 |
T |
|
| Q |
406 |
atgcaactgatttgagaaagattataatgaaaattttttgtaaggatcatgtcttgtattgtattgaatgttttggtcaggtcttcttaatgtattactg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7288078 |
atgcaactgatttgagaaagattataatgaaaa---attgtaaggatcatgtcttgtattgtattgaatgttttggtcaggtcttcttaatgtattactg |
7288174 |
T |
|
| Q |
506 |
ttcttattaatttaaaactgaataaacagggtcatgtcttatatt |
550 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7288175 |
ttcttattaatttaaaattgaataaacagggtcatgtcttatatt |
7288219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University