View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16703_high_13 (Length: 542)
Name: NF16703_high_13
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_13 |
 | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0302 (2 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 22 - 533
Target Start/End: Complemental strand, 21934761 - 21934250
Alignment:
| Q |
22 |
tccactatggtcagcagaaatgaatcatgccctttacatgttggtcttgagctcactggcttaggacgcggactggttgtcaagttcacaccatttgctc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
21934761 |
tccactatggtcagcagaaatgaatcatgccctttacatgttggtcttgagctcactggcttaggacgcgggctggttgtcaaattcacaccatttgctc |
21934662 |
T |
|
| Q |
122 |
cccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtga |
221 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21934661 |
cccatcatgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattaggtga |
21934562 |
T |
|
| Q |
222 |
gaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagaccccactt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21934561 |
gaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagaccccactt |
21934462 |
T |
|
| Q |
322 |
gaaggtatgtataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaactgttgatatgttgaatgagaatggtaagattt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21934461 |
gaaggtatgtataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaactgttgatatgttgaatgagaatggtaagattt |
21934362 |
T |
|
| Q |
422 |
tgttggccctagatggtggtcccctccctcttgttttccagaaagaataatttttaatttataggtacccttgtttttatttacaatggagctatatatt |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21934361 |
tgttggccctagatggtggtcccctccctcttgttttccagaaagaataatttttaatttataggtacccttgtttttatttacaatggagctatatatt |
21934262 |
T |
|
| Q |
522 |
gttcatttcagt |
533 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21934261 |
gttcatttcagt |
21934250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 115 - 472
Target Start/End: Complemental strand, 21370775 - 21370418
Alignment:
| Q |
115 |
tttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagat |
214 |
Q |
| |
|
||||||||||||||||| |||||| || ||| ||||||||||||| | | | | |||||||||||| | ||||| ||||||||||||||||| || |
|
|
| T |
21370775 |
tttgctccccatcacgatgacgacgaggtgaggcttaacagagacttaaaagtgatattccaagcttccacggcttgtggacaatcaacagaatggaaat |
21370676 |
T |
|
| Q |
215 |
tgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagac |
314 |
Q |
| |
|
||||||||| ||| | | | |||||| || || |||||| ||| | |||||||| ||| |||||| | |||||||||||||| ||||||||| || |
|
|
| T |
21370675 |
tgggtgagagggacgcaacaactggaaggagattcgttatcattggaagagatagtggtacagttggatcctttggtaacttctttaagattgtagaaac |
21370576 |
T |
|
| Q |
315 |
cccacttgaaggtatgtataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaactgttgatatgttgaatgagaatggt |
414 |
Q |
| |
|
|| || | ||| ||||| || |||||||| |||||||| || ||||| | |||||| ||||||||||| ||||||| ||| | |||||||||| |
|
|
| T |
21370575 |
tgcagttagaaatatctataacattcaatggtgccctacagaagtgtgtcccaattgtaagtttgaatgtgggactgttggtattgttcgtgagaatggt |
21370476 |
T |
|
| Q |
415 |
aagattttgttggccctagatggtggtcccctccctcttgttttccagaaagaataat |
472 |
Q |
| |
|
|||||||||||||| || ||||| |||||| || |||| |||||||||||||||| |
|
|
| T |
21370475 |
aagattttgttggctcttgatggcactccccttcccattgtgttccagaaagaataat |
21370418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 190 - 425
Target Start/End: Complemental strand, 21403940 - 21403705
Alignment:
| Q |
190 |
tgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatg |
289 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||| ||| | | || |||||||||||| |||||||| || | |||| | ||| ||||||||||| |
|
|
| T |
21403940 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21403841 |
T |
|
| Q |
290 |
gtaacttctttaggattgtagagaccccacttgaaggtatgtataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaac |
389 |
Q |
| |
|
||||||||||||||||||| | || ||| | |||||| | ||| || |||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
21403840 |
gtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
21403741 |
T |
|
| Q |
390 |
tgttgatatgttgaatgagaatggtaagattttgtt |
425 |
Q |
| |
|
||||| ||| | |||||||||||||||| |||| |
|
|
| T |
21403740 |
tgttggtattgttcgtgagaatggtaagattctgtt |
21403705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 190 - 425
Target Start/End: Complemental strand, 21798432 - 21798197
Alignment:
| Q |
190 |
tgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatg |
289 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||| ||| | | || |||||||||||| |||||||| || | |||| | ||| ||||||||||| |
|
|
| T |
21798432 |
tgtggacagtcaacagaatggaggttgggtgagagggacgcaacgactggaagaaggttcattatcaccggaagagatgatagtacagttggatcatatg |
21798333 |
T |
|
| Q |
290 |
gtaacttctttaggattgtagagaccccacttgaaggtatgtataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaac |
389 |
Q |
| |
|
||||||||||||||||||| | || ||| | |||||| | ||| || |||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
21798332 |
gtaacttctttaggattgtgcaaactccaagtagaggtatctttaacatccaatggtgtcctacagaggtgtgtccaagttgtaagtttgaatgtgggac |
21798233 |
T |
|
| Q |
390 |
tgttgatatgttgaatgagaatggtaagattttgtt |
425 |
Q |
| |
|
||||| ||| | |||||||||||||||| |||| |
|
|
| T |
21798232 |
tgttggtattgttcgtgagaatggtaagattctgtt |
21798197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 139 - 479
Target Start/End: Original strand, 4286742 - 4287079
Alignment:
| Q |
139 |
gatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtg |
238 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||| || || |||||| || || ||||| ||||| ||||||||||| ||| | | ||||| |
|
|
| T |
4286742 |
gatgtgaggcttaacagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtg |
4286841 |
T |
|
| Q |
239 |
gaagaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagaccccacttgaaggtatgtataatat |
338 |
Q |
| |
|
|||| ||| ||||| | || || | ||||| || | | |||||| |||||||||| ||||||||||| |||||| | || ||||| ||||| || |
|
|
| T |
4286842 |
gaaggaggctgattgttaccggaagagataatggtgca---ggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacat |
4286938 |
T |
|
| Q |
339 |
acaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaactgttgatatgttgaatgagaatggtaagattttgttggccctagatggt |
438 |
Q |
| |
|
|||||||| |||||||||| || || |||||||| || ||||||| ||||||| | | | ||||||||| |||||| |||||||||| |||||| |
|
|
| T |
4286939 |
tcaatggtgccctacagaggcgtgccctagttgtaaggttcaatgtgggactgttggtgttattcgtgagaatggcaagattctgttggcccttgatggt |
4287038 |
T |
|
| Q |
439 |
ggtcccctccctcttgttttccagaaagaataatttttaat |
479 |
Q |
| |
|
||| |||| || |||| ||||||||||||| ||| ||||| |
|
|
| T |
4287039 |
ggtgcccttccagttgtgttccagaaagaatgattattaat |
4287079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 139 - 469
Target Start/End: Original strand, 4295213 - 4295540
Alignment:
| Q |
139 |
gatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtg |
238 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||| || || |||||| || || ||||| ||||| ||||||||||| ||| | | ||||| |
|
|
| T |
4295213 |
gatgtgaggcttaacagagacttgagagtaacattccaaggtttcacaggttgtgggcagtcgacagattggaggttgggtgagaaggacgcaacgagtg |
4295312 |
T |
|
| Q |
239 |
gaagaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttaggattgtagagaccccacttgaaggtatgtataatat |
338 |
Q |
| |
|
|||| ||| ||||| | || || | ||||| || | | |||||| |||||||||| ||||||||||| |||||| | || ||||| ||||| || |
|
|
| T |
4295313 |
gaaggaggctgattgttaccggaagagataatggtgc---aggatcacatggtaacttttttaggattgtgcagacccaaactggtggtatctataacat |
4295409 |
T |
|
| Q |
339 |
acaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaactgttgatatgttgaatgagaatggtaagattttgttggccctagatggt |
438 |
Q |
| |
|
|||||||| |||||||||| || || |||||||| || ||||||| ||||||| | | | ||||||||| |||||| | ||||| || |||||| |
|
|
| T |
4295410 |
tcaatggtgccctacagaggcgtgccctagttgtaaggttcaatgtgggactgttggtgttattcgtgagaatggcaagattcttttggcgcttgatggt |
4295509 |
T |
|
| Q |
439 |
ggtcccctccctcttgttttccagaaagaat |
469 |
Q |
| |
|
||| |||| ||| | || ||||||||||||| |
|
|
| T |
4295510 |
ggtgcccttcctgtcgtgttccagaaagaat |
4295540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 33990 - 34106
Alignment:
| Q |
136 |
gacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaaga |
235 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| | | || ||||||||| || |||||||| ||||||||||| |||||||| | | || |
|
|
| T |
33990 |
gacgatgttaggcttaacagagacttgagagtaacattcctaacctccacaagttgtgggcagtcaacagactggagattgggcgagaaagatgcaacga |
34089 |
T |
|
| Q |
236 |
gtggaagaaggttgatt |
252 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
34090 |
gtggaaggaggttgatt |
34106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 469
Target Start/End: Complemental strand, 26150 - 25796
Alignment:
| Q |
103 |
aagttcacaccatttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaa |
202 |
Q |
| |
|
|||||||| || |||||||| ||||| || ||| ||||| || ||||||||||||||||| | ||||||| | | || ||||||||| || |||| |
|
|
| T |
26150 |
aagttcactccttttgctcctcatcatgatgatgacaatgttgggcttaacagagacttgagagttacattcctaacatccacaagttgtgggcagtcaa |
26051 |
T |
|
| Q |
203 |
cagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgggacagatagtgctaccaatggatcatatggtaacttctttag |
302 |
Q |
| |
|
|||| |||||||| ||||||||||| | | |||||||| ||||||||| |||| || | ||||| |||| | |||||||| ||||| |
|
|
| T |
26050 |
cagactggagattaggtgagaaagatgctacaagtggaaggaggttgattgtcaccggaagagataatgct------------gaaggtaacttttttag |
25963 |
T |
|
| Q |
303 |
gattgtagagaccccacttgaaggtatgtataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaactgttgatatgttg |
402 |
Q |
| |
|
|||||| |||||| | || ||||| ||||| || ||||||||||||| |||||| || || |||||||| || ||||||| ||||||| | | | |
|
|
| T |
25962 |
gattgtgcagacccaaactggaggtaactataacattcaatggtgtcctaaagaggtgtgccctagttgtaatattcaatgtgggactgttggtgttatt |
25863 |
T |
|
| Q |
403 |
aatgagaatggtaagattttgttggccctagatggtggtcccctccctcttgttttccagaaagaat |
469 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||| |||| || | || ||||||||||||| |
|
|
| T |
25862 |
cgtgagaatggcaagattttgttggccctcgacggtggtgcccttccagtcgtgttccagaaagaat |
25796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 260
Target Start/End: Complemental strand, 15145 - 14988
Alignment:
| Q |
103 |
aagttcacaccatttgctccccatcacgacttcgacgatgttagggttaacagagacttgagaataacattccaagcttcatcaagttgtgtacaatcaa |
202 |
Q |
| |
|
|||||||| || |||||||| ||||| || ||| |||||||| ||||||||||||||||| | ||||||| | | || ||||||||| || |||| |
|
|
| T |
15145 |
aagttcactccttttgctcctcatcatgatgatgacaatgttaggcttaacagagacttgagagttacattcctaacatccacaagttgtgggcagtcaa |
15046 |
T |
|
| Q |
203 |
cagaatggagattgggtgagaaagacaccaagagtggaagaaggttgattatcactgg |
260 |
Q |
| |
|
|||| |||||||| ||||||||||| | | |||||||| || |||||| ||||||| |
|
|
| T |
15045 |
cagactggagattaggtgagaaagatgctacaagtggaaggagattgattgtcactgg |
14988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 469
Target Start/End: Complemental strand, 14842 - 14779
Alignment:
| Q |
406 |
gagaatggtaagattttgttggccctagatggtggtcccctccctcttgttttccagaaagaat |
469 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| |||| || | || ||||||||||||| |
|
|
| T |
14842 |
gagaatggaaagattttgttggccctcgatggtggtgcccttccagtcgtgttccagaaagaat |
14779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 469
Target Start/End: Original strand, 17395 - 17533
Alignment:
| Q |
331 |
tataatatacaatggtgtcctacagaggtatgtccaagttgtaaatttgaatgtggaactgttgatatgttgaatgagaatggtaagattttgttggccc |
430 |
Q |
| |
|
||||| || |||||||| |||| |||||| || || |||||||| || ||||||| ||||||| | | | ||||||||| |||||||||||||||| |
|
|
| T |
17395 |
tataacattcaatggtgccctaaagaggtgtgccctagttgtaatattcaatgtgggactgttggtgttattcgtgagaatggcaagattttgttggccc |
17494 |
T |
|
| Q |
431 |
tagatggtggtcccctccctcttgttttccagaaagaat |
469 |
Q |
| |
|
| |||||| || |||| || | || ||||||||||||| |
|
|
| T |
17495 |
tcgatggtcgtgcccttccagtcgtgttccagaaagaat |
17533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 30902756 - 30902687
Alignment:
| Q |
177 |
agcttcatcaagttgtgtacaatcaacagaatggagattgggtgagaaagacaccaagagtggaagaagg |
246 |
Q |
| |
|
|||||| |||| |||||||||||| || ||||||| ||| ||||| | ||| || ||||||||||||||| |
|
|
| T |
30902756 |
agcttcttcaatttgtgtacaatccactgaatggaaattaggtgatagagatactaagagtggaagaagg |
30902687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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