View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16703_high_14 (Length: 521)
Name: NF16703_high_14
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 38755966 - 38756474
Alignment:
| Q |
17 |
aaaggttgtgtccttcgtatgcttgtttgtttgccacttacgcatgaagagttctggttggcaacagtacgtacgcatgagtatacaccaaaaagtatat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
38755966 |
aaaggttgtgtccttcgtatgcttgtttgtttgccacttacgcatgaagagttctggttggcaacaggacgtacgcatgtgtatacaccaaaaagtatat |
38756065 |
T |
|
| Q |
117 |
ccnnnnnnnnnnn--------gttaaaatataattatccccattaccattagacatttatcaacgtggggttcaacaaattatatttttcaagagaagat |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38756066 |
cctttttttttttttttttttgttaaaatataattatccccattaccattagacatttatcaacgtggggttcaacaaattatatttttcaagagaagat |
38756165 |
T |
|
| Q |
209 |
aacgttggtatatacaatttcctaaacatttgacatttgtctcaagttttaaataaaattataaggaccatttgatattgtctagctagaactagaagct |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38756166 |
aacgttggcatatacaatttcctaaacatttgacatttgtctcaagttttaaataaaattataaggaccatttgatattgtctagctagaactagaagct |
38756265 |
T |
|
| Q |
309 |
ttccaatgttgtattatttcttcactaattagtgtattatatatgccttagcttttcttatatgatgatgatcttgcgaagcatatctttatcatgacat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38756266 |
ttccaatgttgtattatttcttcactaattagtgtattatatatgccttagcctttcttatatgatgatgatcttgcgaagcatatctttatcatgacat |
38756365 |
T |
|
| Q |
409 |
tatgctttgctatggattttatggtcttcccattcgaagacacatgaattcaaaataatttccataacataacactttccaagtgacnnnnnnngtttct |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38756366 |
tatgctttgctatggattttatggtcttcccattcgaagacacatgaattcaaaataatttccataacataacactttccaagtgactttttttgtttct |
38756465 |
T |
|
| Q |
509 |
tcttcttct |
517 |
Q |
| |
|
||||||||| |
|
|
| T |
38756466 |
tcttcttct |
38756474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University