View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_high_18 (Length: 484)
Name: NF16703_high_18
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 94 - 475
Target Start/End: Original strand, 495035 - 495417
Alignment:
| Q |
94 |
tttgatgcactatgatatattagttattagtaatt-actattatatcaatgctttaaaaatataatttcccccttgaacagagaaaatattgtgttttcg |
192 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
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| T |
495035 |
tttgatgcactatgataaattagttattagtaatttactattgtatcaatgctttaaaaatataatttccccctagaacagagaaaataatgtgtaatca |
495134 |
T |
|
| Q |
193 |
gtgtagtctgcctgtcaaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
495135 |
gtgtagtctgcctgtcaaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcatcagaaactgaccaattg |
495234 |
T |
|
| Q |
293 |
taaggaagcttgattttaggctcaactcttctgcttctttcacctacattctcaatgaacggcataggaagttgtgtttccgatgtcctttttaaaccat |
392 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
495235 |
taaggaagcttgattttaggctcaactcttctgcttctttgccctacattctcaatgaacggcataggaagttgtgtttccgatgtcctttttaaaccct |
495334 |
T |
|
| Q |
393 |
tcttggttagcacacgaaacccccatttcttcataatcaaaccatggccatcttcgccagctttaaacgtgatctgtgctcct |
475 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
495335 |
tcttggttagcacgcgaaacccccatttcttcataatcaaaccatggccatcctcgccagctttaaacgtgatctgtgctcct |
495417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 330
Target Start/End: Complemental strand, 25501091 - 25500970
Alignment:
| Q |
209 |
aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattt |
308 |
Q |
| |
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|||||||| |||||||||||||| || |||| |||||||||| || |||| |||||||||||| ||||||| |||||||||||||||| | ||||| |
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| T |
25501091 |
aaaaggccaagattaaagagattagttactttccccttggcttgtttcatctcgacttcatcttcatcagaaacataccaattgtaaggaagttggattt |
25500992 |
T |
|
| Q |
309 |
taggctcaactcttctgcttct |
330 |
Q |
| |
|
||||||||| || |||||||| |
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|
| T |
25500991 |
taggctcaatgctactgcttct |
25500970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 333
Target Start/End: Complemental strand, 25492710 - 25492588
Alignment:
| Q |
211 |
aaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttta |
310 |
Q |
| |
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|||||| ||||||||||||| ||||||| |||||||||| || |||| |||||||||||| || |||| |||||||||||||||| | ||||||| |
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| T |
25492710 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcacaaacataccaattgtaaggaagttggatttta |
25492611 |
T |
|
| Q |
311 |
ggctcaactcttctgcttctttc |
333 |
Q |
| |
|
||||||| || ||||||||||| |
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|
| T |
25492610 |
ggctcaatgctactgcttctttc |
25492588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 317
Target Start/End: Complemental strand, 25642511 - 25642403
Alignment:
| Q |
209 |
aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattt |
308 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||| | || ||||| ||||||||||| ||||||| ||||||||||||| || | ||||| |
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| T |
25642511 |
aaaaggccaagattaaagagatcagtttctttccccttggctccatccttctcggcttcatcttcatcagaaacaaaccaattgtaagggagttggattt |
25642412 |
T |
|
| Q |
309 |
taggctcaa |
317 |
Q |
| |
|
||||||||| |
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|
| T |
25642411 |
taggctcaa |
25642403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 317
Target Start/End: Original strand, 25473842 - 25473950
Alignment:
| Q |
209 |
aaaaggcctagattaaagagattgatttcttttcccttggcttct-tcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatt |
307 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||||| |||| |||||||| | | |||||| ||||||| |||||||||||||||| | |||| |
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| T |
25473842 |
aaaaggccaagattaaagagatcggtttcttttcccttgg-ttctatcattctcgattgaatcttcgttagaaactaaccaattgtaaggaagttggatt |
25473940 |
T |
|
| Q |
308 |
ttaggctcaa |
317 |
Q |
| |
|
|||| ||||| |
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|
| T |
25473941 |
ttagtctcaa |
25473950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10979571 - 10979640
Alignment:
| Q |
1 |
aacttcaagcaaagatagccgatgaatcttatcaggaagtggacaataaattcct-aagaaaccaaacta |
69 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| |||||||| | |||||| |||||||||||||| |
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| T |
10979571 |
aacttcaagcaaagatagcctatgaattttatcagaaagtggaccccatattcctaaagaaaccaaacta |
10979640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 25450057 - 25449968
Alignment:
| Q |
209 |
aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaagga |
298 |
Q |
| |
|
|||||||| ||||||||||||| |||| || ||||||||||| || ||||| |||||||||| ||||||| |||||||||||||| |
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|
| T |
25450057 |
aaaaggccaagattaaagagatcagtttccttccccttggcttcatctttctcggcttcatcttctttagaaactaaccaattgtaagga |
25449968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 25429256 - 25429197
Alignment:
| Q |
258 |
tctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattttaggctcaa |
317 |
Q |
| |
|
|||| |||| ||||||| |||||||| |||||||||||||| | | |||||||||||||| |
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|
| T |
25429256 |
tctcgactttatcttcatcagaaactaaccaattgtaaggatgttagattttaggctcaa |
25429197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 327
Target Start/End: Original strand, 25431183 - 25431300
Alignment:
| Q |
210 |
aaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttt |
309 |
Q |
| |
|
||||||| |||||| ||||| ||||| || | ||||||| | || ||||| ||||||||| |||||||| |||||||||||||||| | |||||| |
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|
| T |
25431183 |
aaaggccaagattagagagaccaatttccttccgcttggctgcatccttctcggcttcatctttgtcagaaactaaccaattgtaaggaagttggatttt |
25431282 |
T |
|
| Q |
310 |
aggctcaactcttctgct |
327 |
Q |
| |
|
||||||| ||| ||||| |
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|
| T |
25431283 |
cggctcaaatctactgct |
25431300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 35153086 - 35152984
Alignment:
| Q |
210 |
aaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttt |
309 |
Q |
| |
|
||||||| |||||| | |||| ||||||||| ||||||||| |||||||||||| || || ||| |||| |||||||||| ||||||| |||||| |
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|
| T |
35153086 |
aaaggcccagattataaagatcaatttcttttgacttggcttcagaattctcaacttcttcctcctcagtaactaaccaattgtagggaagctggatttt |
35152987 |
T |
|
| Q |
310 |
agg |
312 |
Q |
| |
|
||| |
|
|
| T |
35152986 |
agg |
35152984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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