View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16703_high_22 (Length: 472)

Name: NF16703_high_22
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16703_high_22
NF16703_high_22
[»] chr6 (6 HSPs)
chr6 (1-385)||(13704325-13704709)
chr6 (382-458)||(13706028-13706105)
chr6 (382-458)||(13713519-13713596)
chr6 (351-423)||(21689339-21689411)
chr6 (83-245)||(24658668-24658830)
chr6 (355-420)||(28952569-28952634)
[»] chr3 (3 HSPs)
chr3 (355-423)||(8711735-8711803)
chr3 (355-423)||(9063622-9063690)
chr3 (86-155)||(2610007-2610076)
[»] chr8 (2 HSPs)
chr8 (351-421)||(16226818-16226888)
chr8 (351-421)||(16227036-16227106)
[»] scaffold0527 (2 HSPs)
scaffold0527 (352-423)||(1006-1077)
scaffold0527 (352-423)||(9069-9140)
[»] chr4 (3 HSPs)
chr4 (381-428)||(12319556-12319603)
chr4 (383-423)||(13571036-13571076)
chr4 (372-423)||(24955516-24955567)
[»] chr7 (2 HSPs)
chr7 (383-423)||(9704769-9704809)
chr7 (383-423)||(19843047-19843085)
[»] scaffold0032 (1 HSPs)
scaffold0032 (380-423)||(78832-78873)


Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 13704325 - 13704709
Alignment:
Q  1 acttactggtgctagaagacgtgaagagtaaaacaggcaagtgaactggctgaatgcttcaaacgtgacaaacaagggtattattagaatgaatgtccca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13704325 acttattggtgctagaagacgtgaagagtaaaacaggcaagtgaactggctgaatgctacaaacgtgacaaacaagggtattattagaatgaatgtccca 13704424  T
Q  101 attgggaaagtgaaaatgcaaattttactgagtttggtgatacagaagaaatgtttcttccagctcaagaaaaggtgcatacaacaataagaaaataagt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13704425 attgggaaattgaaaatgcaaattttactgagtttggtgatacagaagaaatgtttcttccagctcaagaaaaggtgcatacaacaataagaaaataagt 13704524  T
Q  201 atagttccttaagtcaagatgtagctatcacattataggaactaaaggatggatatttaattatcacgatgcatttttagaatcaatcgaaggtggagat 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13704525 atagttccttaagtaaagatgtagctatcacattataggaactaaaggttggatatttaattatcacgatgcatttttagaatcaatcgaaggtggagat 13704624  T
Q  301 gattccaagattcttgtgatgagaagtcttaaccagttgtacttaaacaaaagggaagtctttaggtagaatcctagagaataag 385  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13704625 gattccaagattcctgtgatgagaagtcttaagcagttgtacttaaacaaaagggaagtctttagttagaatcctagagaataag 13704709  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 13706028 - 13706105
Alignment:
Q  382 taagtctttaggtagagagtcctagagcatagaagtctcttgaaatttttctagaccaattagaa-tctcttgcattt 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  13706028 taagtctttaggtagagagtcctagagcatagaagtctcttgaaatttttctagactaattagaagtctcttgcattt 13706105  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 13713519 - 13713596
Alignment:
Q  382 taagtctttaggtagagagtcctagagcatagaagtctcttgaaatttttctagaccaattagaa-tctcttgcattt 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  13713519 taagtctttaggtagagagtcctagagcatagaagtctcttgaaatttttctagactaattagaagtctcttgcattt 13713596  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 21689339 - 21689411
Alignment:
Q  351 aagggaagtctttaggtagaatcctagagaataagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||||| || ||||| ||||||||||||||    
T  21689339 aagggaagtctttagatagagtcctagagcataagtctttaggtagagattcttagagtatagaagtctcttg 21689411  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 24658830 - 24658668
Alignment:
Q  83 attagaatgaatgtcccaattgggaaagtgaaaatgcaaattttactgagtttggtgatacagaagaaatgtttcttccagctcaagaaaaggtgcatac 182  Q
    |||||||||||||||||| | |||||||||||||||||||||||  ||| |||| | || || || |||| || |||   | |||||||||||||  | |    
T  24658830 attagaatgaatgtcccattcgggaaagtgaaaatgcaaattttgttgaatttgataatgcataaaaaatcttgcttatggttcaagaaaaggtgagtgc 24658731  T
Q  183 aacaataagaaaataagtatagttccttaagtcaagatgtagctatcacattataggaactaa 245  Q
    ||||| || | || |||||| ||||||| | ||||| |||||  |||| || |||||||||||    
T  24658730 aacaacaaaagaagaagtatggttcctttattcaaggtgtagaaatcaaatgataggaactaa 24658668  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 28952569 - 28952634
Alignment:
Q  355 gaagtctttaggtagaatcctagagaataagtctttaggtagagagtcctagagcatagaagtctc 420  Q
    |||||||||||||||| || ||||| | |||||||||||||||||||  ||||| |||||||||||    
T  28952569 gaagtctttaggtagagtcttagagcagaagtctttaggtagagagttatagagaatagaagtctc 28952634  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 8711735 - 8711803
Alignment:
Q  355 gaagtctttaggtagaatcctagagaataagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  8711735 gaagtctttaggtagagtcctagagcataagtctttaggtagagagtcctagagcataaaagtctcttg 8711803  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 9063622 - 9063690
Alignment:
Q  355 gaagtctttaggtagaatcctagagaataagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  9063622 gaagtctttaggtagagtcctagagcataagtctttaggtagagagtcctagagcataaaagtctcttg 9063690  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 2610076 - 2610007
Alignment:
Q  86 agaatgaatgtcccaattgggaaagtgaaaatgcaaattttactgagtttggtgatacagaagaaatgtt 155  Q
    ||||||||||||||||| |||||||| |||||||||||||| |  | |||| ||| ||||||||||||||    
T  2610076 agaatgaatgtcccaatcgggaaagtaaaaatgcaaattttgcaaaatttgatgacacagaagaaatgtt 2610007  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 16226888 - 16226818
Alignment:
Q  351 aagggaagtctttaggtagaatcctagagaataagtctttaggtagagagtcctagagcatagaagtctct 421  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  16226888 aagggaagtctttaggtatagtcctagagaagaagtctttaggtagagattcctagagcatagaagtctct 16226818  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 16227106 - 16227036
Alignment:
Q  351 aagggaagtctttaggtagaatcctagagaataagtctttaggtagagagtcctagagcatagaagtctct 421  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  16227106 aagggaagtctttaggtagagtcctagagaagaagtctataggtagagattcctagagcatagaagtctct 16227036  T

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Target: scaffold0527 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 423
Target Start/End: Original strand, 1006 - 1077
Alignment:
Q  352 agggaagtctttaggtagaatcctagagaataagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    |||||| ||||| |||| | |||||||| ||||||||||||||||||| || ||||||||| ||||||||||    
T  1006 agggaaatctttcggtatagtcctagagcataagtctttaggtagagattcttagagcataaaagtctcttg 1077  T

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Target: scaffold0527; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 423
Target Start/End: Original strand, 9069 - 9140
Alignment:
Q  352 agggaagtctttaggtagaatcctagagaataagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    |||||| ||||| |||| | |||||||| ||||||||||||||||||| || ||||||||| ||||||||||    
T  9069 agggaaatctttcggtatagtcctagagcataagtctttaggtagagattcttagagcataaaagtctcttg 9140  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 12319556 - 12319603
Alignment:
Q  381 ataagtctttaggtagagagtcctagagcatagaagtctcttgaaatt 428  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  12319556 ataagtctttaggtagagagtcctagagcagagaaatctcttgcaatt 12319603  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 13571036 - 13571076
Alignment:
Q  383 aagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  13571036 aagtatttaggtagagagtcctaaagcatagaagtctcttg 13571076  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 24955516 - 24955567
Alignment:
Q  372 tcctagagaataagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    |||||||| | |||||||||||||||||||| |||||||||||  |||||||    
T  24955516 tcctagagcagaagtctttaggtagagagtcatagagcatagagatctcttg 24955567  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 9704769 - 9704809
Alignment:
Q  383 aagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  9704769 aagtatttaggtagagagtcctaaagcatagaagtctcttg 9704809  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 19843047 - 19843085
Alignment:
Q  383 aagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  19843047 aagtctttaggtagag--tcctagagcatagaagtctcttg 19843085  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 78873 - 78832
Alignment:
Q  380 aataagtctttaggtagagagtcctagagcatagaagtctcttg 423  Q
    |||||||||||||||||||  ||||||||||||||||| |||||    
T  78873 aataagtctttaggtagag--tcctagagcatagaagtttcttg 78832  T

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