View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_high_32 (Length: 369)
Name: NF16703_high_32
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 352
Target Start/End: Original strand, 7439891 - 7440237
Alignment:
| Q |
6 |
agcagcacagactgtaacatgtcttgccatggaatactagaatgtactgtcacaacaacacactctcacttcaacaacttcacgcgtctaggcgcgtgag |
105 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7439891 |
agcaacacaaactgtaacatgccttgccatggaatactagaatgtactgtcacaacaacacactctcacttcaactacttcacgcgtctaggcgcgtgag |
7439990 |
T |
|
| Q |
106 |
aattcgtatctattcaaaagaagacaaggtattgctttgtcagtatgttttggaccataggtatcacaattcacaactttgattttagtgattggatcct |
205 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7439991 |
aattcgtatctattcaaaagaagacaagttattgctttgtcagtatgttttggaccataggtatcacaattcacaactttggttttagtgattggatcct |
7440090 |
T |
|
| Q |
206 |
tcgttgcacgcgcctcaatgtagcattggaatttgtagctttgaacattctaaattcagatatgaatgcttttaattcatatggtgtgtcacactgcttt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7440091 |
tcgttgcacgcgcctcaatgtagcattggaatttgtagctttgaacattctaaattcagatatgcatgcttttaattcatatggtgtgtcacactgcttt |
7440190 |
T |
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| Q |
306 |
ttatactagtttgagttcaaagaaagaatgtaagataccttgttcat |
352 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7440191 |
ttatactagtttgtgttcaaagaaagaatgtaagataccttgttcat |
7440237 |
T |
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