View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16703_high_38 (Length: 312)
Name: NF16703_high_38
Description: NF16703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16703_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 23853138 - 23853420
Alignment:
| Q |
18 |
caaaactttggtttctatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaa |
117 |
Q |
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| T |
23853138 |
caaaactttggtttctatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaa |
23853237 |
T |
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| Q |
118 |
taggcatctcattttattatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853238 |
taggcatctcattttattatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttattt |
23853337 |
T |
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| Q |
218 |
atatttggggacaccttatattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgatgatgtcc |
300 |
Q |
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| T |
23853338 |
atatttggggacaccttatattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgttgatgtcc |
23853420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 23752440 - 23752535
Alignment:
| Q |
21 |
aactttggtttctatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaatag |
120 |
Q |
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| T |
23752440 |
aactttggtttctatgcatatttgagggaagtgaatgaagcaacgctgtaagttgggtgggcacaacg-----gggactcaaccaacacaacttaaatag |
23752534 |
T |
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